View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9052_low_3 (Length: 658)
Name: NF9052_low_3
Description: NF9052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9052_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 537; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 18 - 570
Target Start/End: Complemental strand, 6748076 - 6747524
Alignment:
| Q |
18 |
atagacaccgtcatagaacacaggcagaacaatgagaccatctgtggttcttcggcgacactcagttattttctccaattcctgaagacaccagcttgat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6748076 |
atagacaccgtcatagaacacaggcagaacaatgagaccatctgtggttcttcggcgacactcagttattttctccaattcctgaagacaccagcttgat |
6747977 |
T |
|
| Q |
118 |
tcagtatatttctttgaatatacgattactgccatttcacactcttcaattgcattcagaactgaatcagagggttctaatgtctgatactcacttccta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6747976 |
tcagtatatttctttgaatatacgattactgccatttcacactcttcaattgcattcagaactgaatcagagggttctaatgtctgatattcacttccta |
6747877 |
T |
|
| Q |
218 |
accaattattgtcccagaaaacataaactcgatgatctgaatgaagatttagattaagaatgcgatttgaagtaagagccgtatatatacccgtagcaaa |
317 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6747876 |
accaattattgtcccagaaaacataaacccgatgatctgaatgaagatttagattaagaatgcgatttgaagtaagagccgtatatatacccgtagcaaa |
6747777 |
T |
|
| Q |
318 |
agaatgcgagtcttcgtcgcagaaactcaagtacacatggtacctcttcctcctagatttgagttttctaaacaaggtagaaatgaaggaagacatcgat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6747776 |
agaatgcgagtcttcgtcgcagaaactcaagtacacatggtacctcttcctcctagatttgagttttctaaacaaggtagaaatgaaggaagacatcgat |
6747677 |
T |
|
| Q |
418 |
gaatttgattatgaaaagtaggtcaacatgatcaatagtgaatctgaaattgcacaagaaatcgaagatttaagctaaactgaaatgatgaggcaaaaat |
517 |
Q |
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| T |
6747676 |
gaatttgattatgaaaagtaggtcaacgtgatcaatagtgaatctgaaattgcacaagaaatcgaagatttaagctaaactgaaatgatgaggcaaaaat |
6747577 |
T |
|
| Q |
518 |
ttctttgaatagaaaaaatctctttggaccctctccttcgaaccactctctca |
570 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6747576 |
ttctttgaatagaaaaaatctctttggaccctctctttcgaaccactctctca |
6747524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 6503102 - 6503219
Alignment:
| Q |
18 |
atagacaccgtcatagaacacaggcagaacaatgagaccatctgtggttcttcggcgacactcagttattttctccaattcctgaagacaccagcttgat |
117 |
Q |
| |
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||||||| | ||||||||||||| ||||| |||||||||||||||||||||| ||| ||||| ||||||||||||||||| ||||||||||| |||||| |
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| T |
6503102 |
atagacatcatcatagaacacagacagaaaaatgagaccatctgtggttctttggcaacactgggttattttctccaattcttgaagacaccatcttgat |
6503201 |
T |
|
| Q |
118 |
tcagtatatttctttgaa |
135 |
Q |
| |
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| |||||| ||||||||| |
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| T |
6503202 |
ttagtataattctttgaa |
6503219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 6506609 - 6506737
Alignment:
| Q |
18 |
atagacaccgtcatagaacacaggcagaacaatgagaccatctgtggttcttcggcgacactcagttattttctccaattcctgaagacaccagcttgat |
117 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| |||||||| |||||||| ||| ||||| ||||||||||||||||| ||||||||||| ||||| |
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| T |
6506609 |
atagacgccatcatagaacacaggcagaacaataagaccatccatggttctttggcaacactgggttattttctccaattcttgaagacaccatcttgaa |
6506708 |
T |
|
| Q |
118 |
tcagtatatttctttgaatatacgattac |
146 |
Q |
| |
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| | ||| ||||||||| |||| ||||| |
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| T |
6506709 |
ttaaaataattctttgaaaatacaattac |
6506737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 285 - 368
Target Start/End: Original strand, 6506849 - 6506932
Alignment:
| Q |
285 |
tgaagtaagagccgtatatatacccgtagcaaaagaatgcgagtcttcgtcgcagaaactcaagtacacatggtacctcttcct |
368 |
Q |
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|||||||| ||| |||||||||||| | |||||||| |||||||||| ||||||||||||| ||| |||| |||||||||||| |
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| T |
6506849 |
tgaagtaaaagctgtatatatacccaaaacaaaagaacgcgagtcttcatcgcagaaactcaggtatacattgtacctcttcct |
6506932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 6737741 - 6737628
Alignment:
| Q |
18 |
atagacaccgtcatagaacacaggcagaacaatgagaccatctgtggttcttcggcgacactcagttattttctccaattcctgaagacaccagcttgat |
117 |
Q |
| |
|
||||||||| |||||||||| ||| | ||||||| |||||||| | |||| || |||||||||||||||||||||||| ||||||||||| || || |
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| T |
6737741 |
atagacaccatcatagaacaaaggtaaaacaatgggaccatctttagttc---ggtaacactcagttattttctccaattcttgaagacaccatctagaa |
6737645 |
T |
|
| Q |
118 |
tcagtatatttctttga |
134 |
Q |
| |
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| T |
6737644 |
ttagtataattctttga |
6737628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 6523837 - 6523924
Alignment:
| Q |
23 |
caccgtcatagaacacaggcagaacaatgagaccatctgtggttcttcggcgacactcagttattttctccaattcctgaagacacca |
110 |
Q |
| |
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|||| ||| |||||||||| |||||| | |||||||||||| |||| ||| |||||| ||||||||||| ||||| ||||||||||| |
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| T |
6523837 |
caccatcaaagaacacaggaagaacagtaagaccatctgtgactctttggcaacactcggttattttctcgaattcttgaagacacca |
6523924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 353
Target Start/End: Original strand, 6503340 - 6503410
Alignment:
| Q |
283 |
tttgaagtaagagccgtatatatacccgtagcaaaagaatgcgagtcttcgtcgcagaaactcaagtacac |
353 |
Q |
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|||||||||||||| |||||||||| | | |||||||| ||||||||||||| ||||||||| |||||| |
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| T |
6503340 |
tttgaagtaagagctgtatatatactcaaaacaaaagaacgcgagtcttcgtcatagaaactcaggtacac |
6503410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 6543042 - 6543128
Alignment:
| Q |
21 |
gacaccgtcatagaacacaggcagaacaatgagaccatctgtggttcttcggcgacactcagttattttctccaattcctgaagacacca |
110 |
Q |
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|||||| |||||||||||||| | ||||| | |||||||| |||||| || ||||| ||||||||||||||||| ||||||||||| |
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| T |
6543042 |
gacaccatcatagaacacaggtaaaacaacgggaccatctttggttc---ggtaacactgggttattttctccaattcttgaagacacca |
6543128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 22 - 108
Target Start/End: Original strand, 6627643 - 6627726
Alignment:
| Q |
22 |
acaccgtcatagaacacaggcagaacaatgagaccatctgtggttcttcggcgacactcagttattttctccaattcctgaagacac |
108 |
Q |
| |
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||||| |||||||||||||| ||||| || ||| ||||| ||| |||||| ||||||||||||||| | ||||| ||||||||| |
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|
| T |
6627643 |
acaccatcatagaacacaggtagaaccataagatcatctttgg---ttcggcaacactcagttatttttttaaattcatgaagacac |
6627726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 327 - 363
Target Start/End: Original strand, 6627915 - 6627951
Alignment:
| Q |
327 |
gtcttcgtcgcagaaactcaagtacacatggtacctc |
363 |
Q |
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| T |
6627915 |
gtcttggtcgcagaaactcaagtacacatcgtacctc |
6627951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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