View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9052_low_6 (Length: 597)
Name: NF9052_low_6
Description: NF9052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9052_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 34 - 581
Target Start/End: Complemental strand, 11368368 - 11367822
Alignment:
| Q |
34 |
taaccaagaaaaatactccacacagcataaaaatagctcctgagtatcttttggaagaaaaagaaaaggaccatagagaataggctctgcaagataaaag |
133 |
Q |
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| T |
11368368 |
taaccaagaaaaatactccacacagcataaaaatagctcctgagtatcttttggaagaaaaagaaaaggaccatagagaataggctctgcaagataaaag |
11368269 |
T |
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| Q |
134 |
ttgaaagaattagcagccaagtagcatattatcaacttatcaatgttaaagcatgctcaggtttatgtttacctccttctccttgacgtatgcaaaagaa |
233 |
Q |
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| T |
11368268 |
ttgaaagaattagaggccaagtagcatattatcaacttatcaatgttaaagcatgctcaggtttatgtttacctccttcttcttgaagtatgcaaaagaa |
11368169 |
T |
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| Q |
234 |
atcatggagttggtactgtatattgtcatatgagtgtcgaagcaatgaatctttcacagccacttttcccatgccatgcaggacttgtacgataagctat |
333 |
Q |
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| T |
11368168 |
atcatggagttggtactgtatattgtcatacgagtgtcgaagcaatgaatctttcacagccacttttcccatgccatgcaggacttgtatgacaagctat |
11368069 |
T |
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| Q |
334 |
attgaacattgaaatatagaaaatgtaaatgctacaagacattaataattaatctttgtcattattagaatatgctcttttacttttatttttagatcat |
433 |
Q |
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| T |
11368068 |
attgaacattgaaatatagaaaatgtaaatgctacaagacattaataattaatctttgtcattattagaatatgctcttttacttttatttttagatcat |
11367969 |
T |
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| Q |
434 |
tagttaagttagttttcattatgttgcatgcacttggttaagttagtgttctatgttttagatcagtttttgacaaatttgaaggaaatgcctatataaa |
533 |
Q |
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| T |
11367968 |
tagttaagttagttttcattatgttgcatgcacttggttaagttagtgttctatgttttagatcagtttttgacaaatttaaaggaaatgcctatat-aa |
11367870 |
T |
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| Q |
534 |
gcnnnnnnnnnnnaaactgcaaattttattaaacaacctctagcataa |
581 |
Q |
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| T |
11367869 |
gcttcttttttttaagctgcaaattttattaaacaacctctagcataa |
11367822 |
T |
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