View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9052_low_7 (Length: 537)
Name: NF9052_low_7
Description: NF9052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9052_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 119 - 358
Target Start/End: Original strand, 50900811 - 50901053
Alignment:
| Q |
119 |
ctatgcttcacagtatctatctggtatatgaactttgcttaacacccacttaaaatatggataagttgtgtnnnnnnnnn--gtaggaaattcaacacgg |
216 |
Q |
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| T |
50900811 |
ctatgcttcacagtatctatctggtatatgaactttgtttaacacccacttaaaatatggataagttgtgtaaaaaaaaaaagtaggaaattcaacacgg |
50900910 |
T |
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| Q |
217 |
tttgactttgaaatagagaaacttagtaattaagaaaacaaattccaccgcataa-caaaatccccctttttcttaccctagaaaacaatacccagtctc |
315 |
Q |
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| T |
50900911 |
tttgactttgaaatagagaaacttagtaattaagaaaacaaattccaccgcataaacaaaatccccctttttcttaccctagaaaacaatacccaatctc |
50901010 |
T |
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| Q |
316 |
aaaatcaaataacgatataaactaagagagaaaataactaagc |
358 |
Q |
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| T |
50901011 |
aaaatcaaataacgatatgaactaagagagaaaataactaagc |
50901053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 421 - 537
Target Start/End: Original strand, 50901116 - 50901232
Alignment:
| Q |
421 |
aagccagtgttgtgaagagaagtctcatatagagattagagagagttctggaacattctaatggagcttctacgaaaccctaaaaaatcaaaacagagaa |
520 |
Q |
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| T |
50901116 |
aagccagtgttgtgaagagaagtctcatatagagattagagagagttctggaacattctaatggagcttctacgaaaccctaaaaaatcaaaacagagaa |
50901215 |
T |
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| Q |
521 |
gagaaagaccctataac |
537 |
Q |
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| T |
50901216 |
gagaaagaccctataac |
50901232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 50900696 - 50900745
Alignment:
| Q |
1 |
tgatggttttcattcatcagcagcagattaaaccatctcaataggaaatt |
50 |
Q |
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| T |
50900696 |
tgatggttttcattcatcagcagcagattaaaccatctcaataggaaatt |
50900745 |
T |
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