View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9052_low_8 (Length: 532)
Name: NF9052_low_8
Description: NF9052
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9052_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 388; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 61 - 514
Target Start/End: Original strand, 21181071 - 21181528
Alignment:
| Q |
61 |
ataagtcagaaaatttgtaatgcttaacggatcatatgagttacgttatgactcgagttagttgcaacttgaactagttttacttcttacctttcctcct |
160 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21181071 |
ataagtcagaaaattggtaatgcttaacggatcatatgagttacgttatgactcgagttagttgcaacttgaactagttttacttcttacctttcctcct |
21181170 |
T |
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| Q |
161 |
ttgctttctagtccagtaaacaaataaaccaatcagtataagcaatattagaaatgagatcaaagtagcaattagaattagattcctcttcctgttttca |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21181171 |
ttgctttctagtccagtaaacaaataaaccaatcagtataagcaatattagaaatgagatcaaagtagcaattagaattagattcctcttcctgttttca |
21181270 |
T |
|
| Q |
261 |
tgtcttccaactgcagtcgttacaataggttctgcaaaggagacttgtcagttagaaaaatactaccatttattccgaagactgcatttagtttggtgtc |
360 |
Q |
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||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21181271 |
tgtcttccaactgcagtcgtttcattaggttctgcaaaggatacttgtcagttagaaaaatacttccatttattccgaagactgcatttagtttggtgtc |
21181370 |
T |
|
| Q |
361 |
cataacgctactgcgaaaacataaattggagagattttattttatttgtcactaatttcggctgctaa----nnnnnnnctagtcctatattccttcaaa |
456 |
Q |
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| T |
21181371 |
cataacgctactgcgaaaacataaattggagagattttattttattcgtcactaatttcggctgctaattttaagttttctagtcctatattccttcaaa |
21181470 |
T |
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| Q |
457 |
tgatatgaaaaagaaaaggaaagataaagtaggttccttcaacttacttgggggaagc |
514 |
Q |
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| T |
21181471 |
tgatataaaaaagaaaaggaaaggtaaagtaggttccttcaacttacttgggggaagc |
21181528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 142 - 275
Target Start/End: Complemental strand, 23180658 - 23180525
Alignment:
| Q |
142 |
acttcttacctttcctcctttgctttctagtccagtaaacaaataaaccaatcagtataagcaatattagaaatgagatcaaagtagcaattagaattag |
241 |
Q |
| |
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|||||||||||| || |||||||||||||||| ||||||||||| | || ||||| ||| |||| |||||||||||||||| || |||||| || ||| |
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| T |
23180658 |
acttcttaccttccccactttgctttctagtccggtaaacaaataggcaaaccagtacaagaaatagtagaaatgagatcaaaataacaattacaagtag |
23180559 |
T |
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| Q |
242 |
attcctcttcctgttttcatgtcttccaactgca |
275 |
Q |
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||||||||||| |||| |||||||||||| |||| |
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| T |
23180558 |
attcctcttcccgtttccatgtcttccaattgca |
23180525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 143 - 275
Target Start/End: Complemental strand, 23188842 - 23188710
Alignment:
| Q |
143 |
cttcttacctttcctcctttgctttctagtccagtaaacaaataaaccaatcagtataagcaatattagaaatgagatcaaagtagcaattagaattaga |
242 |
Q |
| |
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||||||||||| || |||||||||||||| | ||||||||||| | || ||||| ||| |||| |||||||||||||||| || |||||| || |||| |
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| T |
23188842 |
cttcttaccttccccactttgctttctagttcggtaaacaaataggcaaagcagtaaaagaaatagtagaaatgagatcaaaataacaattataagtaga |
23188743 |
T |
|
| Q |
243 |
ttcctcttcctgttttcatgtcttccaactgca |
275 |
Q |
| |
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|||||||||| |||| | |||||||||| |||| |
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| T |
23188742 |
ttcctcttcccgtttccttgtcttccaattgca |
23188710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 21180999 - 21181043
Alignment:
| Q |
1 |
tttcgtggtcatgcctacttcaaaatttagcaaatcatcccctag |
45 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21180999 |
tttcatggtcatgcctacttcaaaatttagcaaatcatcccctag |
21181043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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