View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9053_high_13 (Length: 244)

Name: NF9053_high_13
Description: NF9053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9053_high_13
NF9053_high_13
[»] chr1 (2 HSPs)
chr1 (15-226)||(9587086-9587297)
chr1 (16-224)||(9581516-9581724)
[»] chr7 (1 HSPs)
chr7 (131-223)||(10615654-10615746)
[»] chr4 (3 HSPs)
chr4 (127-223)||(1755490-1755586)
chr4 (20-82)||(532653-532715)
chr4 (187-223)||(3437643-3437679)
[»] chr6 (4 HSPs)
chr6 (118-223)||(6417020-6417125)
chr6 (185-223)||(8913443-8913481)
chr6 (127-173)||(9412061-9412107)
chr6 (15-83)||(9411955-9412023)
[»] chr8 (1 HSPs)
chr8 (115-165)||(32151893-32151943)
[»] chr3 (1 HSPs)
chr3 (185-223)||(51763413-51763451)
[»] chr2 (1 HSPs)
chr2 (185-219)||(1036638-1036672)


Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 9587086 - 9587297
Alignment:
Q  15 cagagagattaattttgcggagtctgaaaagtgctaacgaaagagtctctaccccatggagaaagctattgcaaccgtcgatacaaagtaaagggtcatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||  ||||| |||||||||| |    
T  9587086 cagagagattaattttgcggagtctgaaaagtgctaacgaaagagtctcaaccccatggagaaagctattgcaactgtcgtcacaaattaaagggtcact 9587185  T
Q  115 gaggtcaagtatttcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagtt 214  Q
     ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||| |||||| |||||||||||||||||||| |||    
T  9587186 taggtcaagtatttcaagtaaagggaaacatttggcaatgaggaacaagtcattactattgaaaacacggatgtttgaacaaatgagagatgtcaacgtt 9587285  T
Q  215 gtaatctttaag 226  Q
    ||||||||||||    
T  9587286 gtaatctttaag 9587297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 9581516 - 9581724
Alignment:
Q  16 agagagattaattttgcggagtctgaaaagtgctaacgaaagagtctctaccccatggagaaagctattgcaaccgtcgatacaaagtaaagggtcattg 115  Q
    ||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||    
T  9581516 agagagattaattttgcggagtctggaaaatgctaatgaaagagtctctaccccatggagaatgctattgcaaccgtcgatacaaaataaagggccattg 9581615  T
Q  116 aggtcaagtatttcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagttg 215  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||  || |||||| |||||||||||||||||||| ||||    
T  9581616 aggtcaagtatttcaagtaaaggaaaacattcggcaatgaggaacaagtcattactattgaaaatacggatgttcgaacaaatgagagatgtcaacgttg 9581715  T
Q  216 taatcttta 224  Q
    |||||||||    
T  9581716 taatcttta 9581724  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 223
Target Start/End: Original strand, 10615654 - 10615746
Alignment:
Q  131 agtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagttgtaatcttt 223  Q
    ||||||||||||||||| ||||| |||||||  ||| |||||| ||| | |  ||||| ||||||| ||||||| ||||||||||||||||||    
T  10615654 agtaaagggaaacattctgcaataaggaacagatcactactattgaagttagcgatgtgggaacaagtgagagaggtcaaagttgtaatcttt 10615746  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 223
Target Start/End: Original strand, 1755490 - 1755586
Alignment:
Q  127 ttcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagttgtaatcttt 223  Q
    |||||| ||||||||||| || ||||||||||| ||||||||  ||| || || |  ||||||||||||  ||||||| ||||||||||||||||||    
T  1755490 ttcaagcaaagggaaacagtcagcaatgaggaagaagtcattggtatggagatgagcgatgttggaacatgtgagagaggtcaaagttgtaatcttt 1755586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 82
Target Start/End: Original strand, 532653 - 532715
Alignment:
Q  20 agattaattttgcggagtctgaaaagtgctaacgaaagagtctctaccccatggagaaagcta 82  Q
    |||||||  ||||||||| ||||||||| ||| ||||||||||| || |||||||||||||||    
T  532653 agattaaccttgcggagtttgaaaagtgataatgaaagagtctccacaccatggagaaagcta 532715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 3437679 - 3437643
Alignment:
Q  187 gttggaacaaatgagagatgtcaaagttgtaatcttt 223  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  3437679 gttggaacaactgagagaggtcaaagttgtaatcttt 3437643  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 223
Target Start/End: Original strand, 6417020 - 6417125
Alignment:
Q  118 gtcaagtatttcaagtaaagggaaacattcggcaatgaggaacaagtcattactatagaaatcacagatgttggaacaaatgagagatgtcaaagttgta 217  Q
    |||||||  |||||| |||||||||||||| ||||| |||||||  ||| |||  | ||||| |  ||||| ||||||| ||||||| ||||||||||||    
T  6417020 gtcaagttcttcaagcaaagggaaacattctgcaataaggaacagatcactaccgttgaaattaacgatgtgggaacaagtgagagaggtcaaagttgta 6417119  T
Q  218 atcttt 223  Q
     |||||    
T  6417120 ttcttt 6417125  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 8913481 - 8913443
Alignment:
Q  185 atgttggaacaaatgagagatgtcaaagttgtaatcttt 223  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  8913481 atgttggaacaattgagagaggtcaaagttgtaatcttt 8913443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 173
Target Start/End: Original strand, 9412061 - 9412107
Alignment:
Q  127 ttcaagtaaagggaaacattcggcaatgaggaacaagtcattactat 173  Q
    |||||| |||||||||||||| |||||||| ||||||||||| ||||    
T  9412061 ttcaagcaaagggaaacattcagcaatgagtaacaagtcattgctat 9412107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 9411955 - 9412023
Alignment:
Q  15 cagagagattaattttgcggagtctgaaaagtgctaacgaaagagtctctaccccatggagaaagctat 83  Q
    ||||||||||||| |||  |||| |||||||||  || |||||||||||||||| ||  ||||||||||    
T  9411955 cagagagattaatcttggtgagtttgaaaagtgtcaatgaaagagtctctaccctattaagaaagctat 9412023  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 32151893 - 32151943
Alignment:
Q  115 gaggtcaagtatttcaagtaaagggaaacattcggcaatgaggaacaagtc 165  Q
    ||||||||||  ||| || ||||||||||| ||||||||||||||||||||    
T  32151893 gaggtcaagttcttcgagcaaagggaaacaatcggcaatgaggaacaagtc 32151943  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 51763451 - 51763413
Alignment:
Q  185 atgttggaacaaatgagagatgtcaaagttgtaatcttt 223  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  51763451 atgtgggaacaagtgagagatgtcaaagttgtaatcttt 51763413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 219
Target Start/End: Complemental strand, 1036672 - 1036638
Alignment:
Q  185 atgttggaacaaatgagagatgtcaaagttgtaat 219  Q
    |||||||||||||||||||| ||||||||||||||    
T  1036672 atgttggaacaaatgagagaagtcaaagttgtaat 1036638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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