View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9053_high_5 (Length: 397)
Name: NF9053_high_5
Description: NF9053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9053_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 31036982 - 31036771
Alignment:
| Q |
1 |
atgtcacataatccaactttgtctcaactccgctatatacttttacacgatacaaccttctctatatacgatcctttcccttcactggcccgc------- |
93 |
Q |
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| T |
31036982 |
atgtcaaataatccaactttgtctcagcttctctatatacttttacacgatacaaccttctctgtatacgattttttccattcactggccctcggccctc |
31036883 |
T |
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| Q |
94 |
cattagaccatacaccaacgcctt-gccatccagcgcatttgatgagtcatggtcccaaattatttgagatgctactattgctccaacacgaggatacaa |
192 |
Q |
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| T |
31036882 |
cattagaccatacgccaacgcctttgccatccagcgcatttgatgagtcctggtcccaaattgtttgagatgctactattgctccaacgtgagaatacaa |
31036783 |
T |
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| Q |
193 |
aatatctgacta |
204 |
Q |
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||| |||||||| |
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| T |
31036782 |
aatttctgacta |
31036771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 256 - 387
Target Start/End: Complemental strand, 31036641 - 31036510
Alignment:
| Q |
256 |
aagctggtatattgtatgttaaatgaatgccgtcaatttgcaaattgttgccaagttcagaatgatttcatactttttgcgaaagctatcacatatgaca |
355 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||| || ||||||| |||||||||||||| |||| |
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| T |
31036641 |
aagctgttatattgtatgttaaatgaatgccgtcattttgcaaattgttgccaagttcaaattgatcaattattttttgcaaaagctatcacatacgaca |
31036542 |
T |
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| Q |
356 |
gttggagatttaaaaagtacttaaaatgatgt |
387 |
Q |
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| T |
31036541 |
gttggagatttaaatagtacttgaaatgatgt |
31036510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 31036743 - 31036687
Alignment:
| Q |
201 |
actattatcttgtgggagaatttataagaagtaactttgtaattttgaggatacaaa |
257 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31036743 |
actattatcttgtggaagaatttataagaagtaactttgtaattttgagaatacaaa |
31036687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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