View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9053_high_8 (Length: 306)
Name: NF9053_high_8
Description: NF9053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9053_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 13871103 - 13871390
Alignment:
| Q |
1 |
atgtagttatgagctaataagatacatatttaacttgctgaacaagtaatatcagggtaatggatgcgaccagaaacttacatatgttctcttagaagga |
100 |
Q |
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| T |
13871103 |
atgtagttatgagctaataagatacatatttaacttgctgaacaagtaatatcaaggtaatggatgcgaccagaaacttacatatgttctcttagaagga |
13871202 |
T |
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| Q |
101 |
caatcaacacttttgtcattccactcgtgagcggccaaatatcgcttatcaatcggcacatatggcacatgttttttggcctaccaataaagtcaacact |
200 |
Q |
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| T |
13871203 |
caatcaacacttttgtcattccactcgtgagcggccaaatatcgcttatcaatcggcgcatatggcacatgttttttggcctaccaataaagtcaacact |
13871302 |
T |
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| Q |
201 |
tgttaacaaataacacataatctatgataacgaatttagacaataagtgttaagtttttacataacatctccggtgccgcaatgatat |
288 |
Q |
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| T |
13871303 |
tgttgacaaataacacataatctatgataacgaatttggacaataagtgttaagtttttacataacatctccggtgccgcaatgatat |
13871390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 14011228 - 14011515
Alignment:
| Q |
1 |
atgtagttatgagctaataagatacatatttaacttgctgaacaagtaatatcagggtaatggatgcgaccagaaacttacatatgttctcttagaagga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14011228 |
atgtagttatgagctaataagatacatatttaacttgctgaacaagtaatatcaaggtaatggatgcgaccagaaacttacatatgttctcttagaagga |
14011327 |
T |
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| Q |
101 |
caatcaacacttttgtcattccactcgtgagcggccaaatatcgcttatcaatcggcacatatggcacatgttttttggcctaccaataaagtcaacact |
200 |
Q |
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| T |
14011328 |
caatcaacacttttgtcattccactcgtgagcggccaaatatcgcttatcaatcggcgcatatggcacatgttttttggcctaccaataaagtcaacact |
14011427 |
T |
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| Q |
201 |
tgttaacaaataacacataatctatgataacgaatttagacaataagtgttaagtttttacataacatctccggtgccgcaatgatat |
288 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14011428 |
tgttgacaaataacacataatctatgataacgaatttggacaataagtgttaagtttttacataacatctccggtgccgcaatgatat |
14011515 |
T |
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