View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9053_low_1 (Length: 610)
Name: NF9053_low_1
Description: NF9053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9053_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 18 - 602
Target Start/End: Complemental strand, 33676315 - 33675732
Alignment:
| Q |
18 |
ggaagtactgcttaaattgatcattttgtttcggcacattccctcttccaatagacggtaactgagcatcatagttgaacatttccttgggttgatcagc |
117 |
Q |
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| T |
33676315 |
ggaagtactgcttaaattgatcattttgtttcggcacattccctcttccaataggcggtaactgagcatcatagttgaacatttccttgggttgatcagc |
33676216 |
T |
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| Q |
118 |
atttccatggacgaactccgcagtcaacagattgtcattaaattttggctggcacagacaaaattcaattaataagccagattcaactattactaataat |
217 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33676215 |
attcccatggacgaactccgcagtcaacagattgtcattaaattttggctggcacagacaaaattcaattaataagccagattcaactattactaataat |
33676116 |
T |
|
| Q |
218 |
agtgtaattagaaaaatgatagatagagttaccaaaaacataatgatagatataaaatgaaagcaggttgtgaactgtccccaaaccgcggtctatcttt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33676115 |
agtgtaattagaaaaatgatagatagagttaccaaaaacataatgatagatataaaatgaaagcaggttgtgaactgtcccaaaaccgcggtctatcttt |
33676016 |
T |
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| Q |
318 |
aaatggaagaaaaggctggtacaaatcttaagaatgaccatctaatgaaaaacaatgttatcctaataagataagcagctcaagtgtttcctttttaaac |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33676015 |
aaatggaagaaaaggctggtacaaatcttaagaatgaccatctaatgaaaaacaatgttatcctaataagataagcagctcaagtgtttcc-ttttaaag |
33675917 |
T |
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| Q |
418 |
agtctgcatttgcatgtgtttggaaaaacaatcatgtgataaccgataacctaatcatagtggtgcctcttttaaacgtactttgtttaataaacaaggg |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33675916 |
agtctgcatttgcatgtgtttggaaaaacaatcatgtgataaccgataacctaatcatagtggtgcctcttttaaacgtactttgtttaataaacaaggg |
33675817 |
T |
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| Q |
518 |
ctggtagaattatcctcaaaattccataaagaaacagcagcagaatgtatgaataggaggtgacactggttctgagcaaccacca |
602 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33675816 |
ctggtagaattatcctcaaaattccataaagaaacagcagcagaatgtatgaataggaggtgacactggttctgagcaaccacca |
33675732 |
T |
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