View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9053_low_10 (Length: 399)
Name: NF9053_low_10
Description: NF9053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9053_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 49 - 279
Target Start/End: Original strand, 49731659 - 49731885
Alignment:
| Q |
49 |
agcccagttattgacaactacattgagctgaattctcgaatttggagtatatccaaccagttaggcgtatgttgtccacagttgaaggttatgtatgcct |
148 |
Q |
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| T |
49731659 |
agcccagttattgacaactacattgagctgaattctcaaatttggagtatatccaaccagttaggcgtatgttgttcacagttgaaggt----tatgcct |
49731754 |
T |
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| Q |
149 |
ttgcttgtactttagctccctactttgtacgtgaaatgggtacnnnnnnnnatcaccaaataatgtaattattgtgcaaaataaaatgacagttaatttc |
248 |
Q |
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| T |
49731755 |
ttgcttgtactttagctccctactttgtacgtgaaatgggtactttttattatcaccaaataatgtaattattgtgcaaaataaaatgacagttaatttc |
49731854 |
T |
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| Q |
249 |
cagcgtactaatttacgtgttgtatttctag |
279 |
Q |
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| T |
49731855 |
cagcgtactaatttacgtgttgtatttctag |
49731885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 277 - 399
Target Start/End: Original strand, 49731911 - 49732033
Alignment:
| Q |
277 |
tagtacataaaatggacaagatcataatggtcaacacgtaaccaaagtttgaaaggtaattcccaaataacaaacagcttacccatgaagagaaagcagc |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49731911 |
tagtacataaaatggacaagatcataatggtcaacacgtaaccaaagtttgaaaggtaattcccaaataacaaacagcttacccatgaagagaaagcagc |
49732010 |
T |
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| Q |
377 |
ttacatggtcctagaaggaaaaa |
399 |
Q |
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| T |
49732011 |
ttacatggtcctagaaggaaaaa |
49732033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 22345170 - 22345129
Alignment:
| Q |
1 |
tgactgaatttccattcaaaacatatcactaattcagcaaag |
42 |
Q |
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| T |
22345170 |
tgactgaatttccattcaaaacatgtcactatttcagcaaag |
22345129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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