View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9053_low_14 (Length: 377)
Name: NF9053_low_14
Description: NF9053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9053_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 354
Target Start/End: Original strand, 3261175 - 3261503
Alignment:
| Q |
11 |
tagattatacttacaaactgacttaaactcgtaaagactcaattggaggactattgattacttcaataattcattgctatcatgacatgagctgatgctt |
110 |
Q |
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| T |
3261175 |
tagattatacttacaaactgacttaaactcgtaaagactcaattggag----attgattacttcaataattcattgctatcatgacatgagctgatgctt |
3261270 |
T |
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| Q |
111 |
aaattgtcccgtttaacctaacgaaagcacgattgaatggtacatagatggtacatagaccaatagtacagcatggaaacaaacagggtccaacaaatat |
210 |
Q |
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| T |
3261271 |
aaattgtcccgtttaacctaacgaaagcacgattgaacggtaaatag-----------accaatagtacagcatggaaacaaacagggtccaacaaatat |
3261359 |
T |
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| Q |
211 |
aaagaaggaagtatgccaaaaattagtacaagtttggatttggaatggttggaggaggatagcatgcagccagccagctatactagagacatatttgtga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3261360 |
aaagaaggaagtatgccaaaaattagtacaagtttggatttggaatggttggaggaggatagcatgcagccagccagctatactagagacatatttgtga |
3261459 |
T |
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| Q |
311 |
taactgataactaaaatgagcggcaaatatcatagaatacccca |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3261460 |
taactgataactaaaatgagcggcaaatatcatagaatacccca |
3261503 |
T |
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