View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9053_low_19 (Length: 305)
Name: NF9053_low_19
Description: NF9053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9053_low_19 |
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| [»] chr2 (7 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 9 - 305
Target Start/End: Original strand, 15493652 - 15493948
Alignment:
| Q |
9 |
gaagcagagataaatgcaaatgcgtctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggta |
108 |
Q |
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| T |
15493652 |
gaagctgagataaatgcaaatgtgtctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggta |
15493751 |
T |
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| Q |
109 |
aagtagttgcagcagcgaacactccagtagcaatgactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttag |
208 |
Q |
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| T |
15493752 |
aagtagttgcagcagcgaacactccagtagcaatgactgttgaaattagcatacaagactcggcagtttttttcatccaagactctgcatcttcccttag |
15493851 |
T |
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| Q |
209 |
tttttcatgctcatttgagaacagttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttctat |
305 |
Q |
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| T |
15493852 |
tttttcatgctcattcgagaacagttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttctat |
15493948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 28 - 305
Target Start/End: Original strand, 15517497 - 15517774
Alignment:
| Q |
28 |
atgcgtctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagtagttgcagcagcgaa |
127 |
Q |
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|||| ||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| |||||||||||| |
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| T |
15517497 |
atgcatctgatattgcaaaccccaaaaatgatggtttcttcaaaaagtttggttttcctgtgttatcgataccacctggtaaagtaactgcagcagcgaa |
15517596 |
T |
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| Q |
128 |
cactccagtagcaatgactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttagtttttcatgctcatttgag |
227 |
Q |
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| T |
15517597 |
cactccggtagcaatgactgttgaaattagcatacacgactccgcagtttttttcatccaagactctgcatcttcccttagtttttcatgctcatttgag |
15517696 |
T |
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| Q |
228 |
aacagttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttctat |
305 |
Q |
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| T |
15517697 |
aacagttcttctgcagtcacgcctttggagtttttcgacttaatctgtgcgggcagcattatcttctttacattctat |
15517774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 21 - 305
Target Start/End: Original strand, 15534003 - 15534287
Alignment:
| Q |
21 |
aatgcaaatgcgtctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagtagttgcag |
120 |
Q |
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| T |
15534003 |
aatgcagatgcatctgatgttgcaaataccaagaatggtgttttcgtcaactagtttggttttccggtgtcatcggtaccacctggtaaagtaactgcag |
15534102 |
T |
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| Q |
121 |
cagcgaacactccagtagcaatgactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttagtttttcatgctc |
220 |
Q |
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| T |
15534103 |
cagcgaacactccggtagcaatgactgttgaaattagcatacatgactccgcagtttttttcatccaagactctgcatcctcccttagttttgcatgctc |
15534202 |
T |
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| Q |
221 |
atttgagaacagttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttctat |
305 |
Q |
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||||||||| | |||| |||||||| | || |||||||| |||| ||||||||||||||||||||||||||||| |||||| |
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| T |
15534203 |
atttgagaataactcttgtgcagtcaagcgttcagagtttttcaactttatttgtgctggcaacattatcttctttacattctat |
15534287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 15 - 303
Target Start/End: Original strand, 15654450 - 15654738
Alignment:
| Q |
15 |
gagataaatgcaaatgcgtctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagtag |
114 |
Q |
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||||| |||||| |||| |||||||||||||||||||||||||||| ||| ||||| |||| ||||||||| | |||||||||||| ||||||||||||| |
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| T |
15654450 |
gagatgaatgcagatgcatctgatattgcaaacaccaagaatgatgttttattcaaatagtgtggttttccagagtcatcggtaccgcctggtaaagtag |
15654549 |
T |
|
| Q |
115 |
ttgcagcagcgaacactccagtagcaatgactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttagtttttc |
214 |
Q |
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| T |
15654550 |
ttgcagcagcaaacactccggtagcaatgacagttgaaattagcatgcaagactcggcagtttttttcatccacgactctgcattttctcttagtgtttc |
15654649 |
T |
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| Q |
215 |
atgctcatttgagaacagttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttct |
303 |
Q |
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| T |
15654650 |
atgctcaattgagaatagctcttgtgcagtaaagccttcagagtttctcatctttatctgtgcaggcaacattatcttctttactttct |
15654738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 15 - 303
Target Start/End: Original strand, 15645398 - 15645686
Alignment:
| Q |
15 |
gagataaatgcaaatgcgtctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagtag |
114 |
Q |
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||||| |||||| |||| |||||||||||||||||||||||||||| ||| ||||| |||| ||||||||| | |||||||||||| ||||||||||||| |
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| T |
15645398 |
gagatgaatgcagatgcatctgatattgcaaacaccaagaatgatgttttattcaaatagtgtggttttccagagtcatcggtaccgcctggtaaagtag |
15645497 |
T |
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| Q |
115 |
ttgcagcagcgaacactccagtagcaatgactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttagtttttc |
214 |
Q |
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|||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||| | |||||| |||||||||| ||| |||||| |||| |
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| T |
15645498 |
ttgcagcagcaaacactccggtagcaatgacagttgaaattagcatgcaagactcggccgtttttttcatccacgactctgcattttctcttagtgtttc |
15645597 |
T |
|
| Q |
215 |
atgctcatttgagaacagttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttct |
303 |
Q |
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| T |
15645598 |
atgctcaattgagaatagctcttgtgcagtaaagccttcagagtttctcatctttatctgtgcaggcaacattatcttctttactttct |
15645686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 15 - 303
Target Start/End: Original strand, 15624773 - 15625061
Alignment:
| Q |
15 |
gagataaatgcaaatgcgtctgatattgcaaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagtag |
114 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||| ||| ||||| |||| ||||||||| | ||||||||||| ||||||||||||| |
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| T |
15624773 |
gagatgaatgcaaatgcatctgatattgcaaacaccaagaatgatgttttattcaaatagtgtggttttccagaatcatcggtaccgcctggtaaagtag |
15624872 |
T |
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| Q |
115 |
ttgcagcagcgaacactccagtagcaatgactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttagtttttc |
214 |
Q |
| |
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|||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||| |||||| |||||||| | ||| |||||| |||| |
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| T |
15624873 |
ttgcagcagcaaacactccggtagcaatgacagttgaaattagcatgcaagactcggcagtttttttcatccacgactctgcgttttctcttagtgtttc |
15624972 |
T |
|
| Q |
215 |
atgctcatttgagaacagttcttctgcagtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttct |
303 |
Q |
| |
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||||||| ||||||| || |||| ||| || | | ||| |||||| | ||| || ||| | ||||||||||||||||||||||||| |
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| T |
15624973 |
atgctcaattgagaatagctcttgtgctgtaaagccttcagagtttctcatctttatctgtccaggcaacattatcttctttactttct |
15625061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 43 - 305
Target Start/End: Original strand, 15601209 - 15601471
Alignment:
| Q |
43 |
caaacaccaagaatgatggtttcttcaagtagtttggttttcctgtgtcatcggtaccacctggtaaagtagttgcagcagcgaacactccagtagcaat |
142 |
Q |
| |
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|||||||||| ||||||||||||||||| || ||||||||||||||||||||| |||| ||||||| ||||||||||||||| |||||||| |||||||| |
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| T |
15601209 |
caaacaccaaaaatgatggtttcttcaaataatttggttttcctgtgtcatcgataccgcctggtacagtagttgcagcagcaaacactccggtagcaat |
15601308 |
T |
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| Q |
143 |
gactgttgaaattagcatacaagactcggcagnnnnnnncatccaagactctgcatcttcccttagtttttcatgctcatttgagaacagttcttctgca |
242 |
Q |
| |
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||| | ||||||||||||||||||||| || | |||||| |||||||||| ||| |||||||||| |||||| |||||||| | ||||| |||| |
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| T |
15601309 |
gacggctgaaattagcatacaagactctgcggttttcttcatccatgactctgcattttctcttagtttttgatgctcttttgagaagacttcttgtgca |
15601408 |
T |
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| Q |
243 |
gtcatgtctttggagttttttgacttaatttgtgctggcaacattatcttctttactttctat |
305 |
Q |
| |
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|| | | ||| |||||| | || ||||||||||||| |||||||||||||||||||||| |
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| T |
15601409 |
gtaaggccttcagagtttctcatgtttatttgtgctggcagcattatcttctttactttctat |
15601471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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