View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9053_low_2 (Length: 555)
Name: NF9053_low_2
Description: NF9053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9053_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 23 - 543
Target Start/End: Original strand, 34817247 - 34817749
Alignment:
| Q |
23 |
ttacccatgagtattccagaaagtctaagagccatgggaatcgctggattcagaatttcttcactgtgaagaagcaaaaaacgacaccgtaagaacgatt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34817247 |
ttacccatgagtattccagaaagtctaagagccatgggaatcgctggattcagaatttcttcactgtgaagaagcaaaaaacgacaccgtaagaacgatt |
34817346 |
T |
|
| Q |
123 |
tcggttaaagttagaagaagaatgtgaataatcgattatagttaccagattttgatgatattgagcttattcaacttcttcctgttgatcttagcgtgca |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34817347 |
tcggttaaagttagaagaagaatgtgaataatagattatagttaccagattttgatgatattgagcttattcaacttcttcctgttgatcttagcgtgca |
34817446 |
T |
|
| Q |
223 |
tcgttgccgccatccttcaaacaaaaaatcgattccgatcctcattttagtaacattgnnnnnnncgcaaaaacagagagatgaagatgcaaatgaaaat |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
34817447 |
tcgttgccgccatccttcaaacaaaaaatcgattccgatcctcattttagtaacattgaaaaaaacgcaaaaacagagag------------------at |
34817528 |
T |
|
| Q |
323 |
gaatatgaaatgtgagattgataccaaatttgaccgagaggtgctttgcgagctagaagctggtgtgaatagaacattgtttatttcttctagaaactat |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34817529 |
gaatatgaaatgtgagattgataccaaatttgaccgagaggtgctttgcgagctagaagctggtgtgaatagaacattgtttatttcttctagaaactat |
34817628 |
T |
|
| Q |
423 |
ggagaagatgaaaatgttatgagaaatttgaatttgttgttacaaggtgaagaaaattggttgtagtgaaaattcaaaatgtgaatgaacgaatgtgtga |
522 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34817629 |
ggagaagatgaaaatgttatgagaaatttgaatttgttgttacaaggtgaagaaaattggttgtagtgaaaattcaaaatgtgaatgaacgaatgtgtga |
34817728 |
T |
|
| Q |
523 |
attagttgttgttgtagtata |
543 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
34817729 |
attagttgttgttgtattata |
34817749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 164 - 280
Target Start/End: Original strand, 35867449 - 35867564
Alignment:
| Q |
164 |
ttaccagattttgatgatattgagcttattcaacttcttcctgttgatcttagcgtgcatcgttgccgccatccttcaaacaaaaaatcgattccgatcc |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||| | | |
|
|
| T |
35867449 |
ttaccagattttgatgatattgagcttattcaacttcttcctgttgatcttggcgtgcatcgttgccgccatccttcaaccaaaaaa-cgattccggttc |
35867547 |
T |
|
| Q |
264 |
tcattttagtaacattg |
280 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
35867548 |
tcattttagtaacattg |
35867564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 35867308 - 35867380
Alignment:
| Q |
23 |
ttacccatgagtattccagaaagtctaagagccatgggaatcgctggattcagaatttcttcactgtgaagaa |
95 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
35867308 |
ttacccatgagtattccagaaagtctcagagccatgggaatcgctggattcagaatctcttcactgtgaagaa |
35867380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 344 - 479
Target Start/End: Original strand, 35867676 - 35867805
Alignment:
| Q |
344 |
taccaaatttgaccgagaggtgctttgcgagctagaagctggtgtgaatagaacattgtttatttcttctagaaactatggagaagatgaaaatgttatg |
443 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| |||||||| ||||| || |||||||||| ||||| | ||||| ||| ||||| |||| |
|
|
| T |
35867676 |
taccaaatttgaccgagaggtgcttttctagcaagaagctgatgtgagtaaaacattgtttgtttct------agctatgaagattttgaaattgttcaa |
35867769 |
T |
|
| Q |
444 |
agaaatttgaatttgttgttacaaggtgaagaaaat |
479 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||| |
|
|
| T |
35867770 |
agaaatttgaatgtgttgttataaggtgaagaaaat |
35867805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University