View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9053_low_20 (Length: 292)

Name: NF9053_low_20
Description: NF9053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9053_low_20
NF9053_low_20
[»] chr4 (9 HSPs)
chr4 (1-275)||(55907578-55907852)
chr4 (56-158)||(661854-661956)
chr4 (108-233)||(3437630-3437755)
chr4 (126-226)||(547943-548043)
chr4 (109-222)||(1755485-1755598)
chr4 (107-154)||(571330-571377)
chr4 (4-123)||(532773-532892)
chr4 (107-146)||(553767-553806)
chr4 (65-161)||(8186326-8186422)
[»] chr2 (3 HSPs)
chr2 (1-275)||(1036514-1036788)
chr2 (1-105)||(1036320-1036424)
chr2 (109-159)||(45244859-45244909)
[»] chr8 (7 HSPs)
chr8 (57-157)||(14004140-14004240)
chr8 (43-159)||(17642880-17642996)
chr8 (65-154)||(17635623-17635712)
chr8 (57-157)||(5766564-5766664)
chr8 (109-153)||(32151969-32152013)
chr8 (107-154)||(21236154-21236201)
chr8 (100-138)||(18314640-18314678)
[»] chr7 (2 HSPs)
chr7 (104-159)||(10615708-10615763)
chr7 (47-161)||(7977866-7977980)
[»] chr1 (3 HSPs)
chr1 (74-156)||(7555196-7555278)
chr1 (92-152)||(33161200-33161260)
chr1 (107-159)||(9581685-9581737)
[»] chr6 (8 HSPs)
chr6 (104-159)||(6417087-6417142)
chr6 (107-159)||(7132300-7132352)
chr6 (109-152)||(6395539-6395582)
chr6 (107-158)||(7135224-7135275)
chr6 (107-158)||(7138147-7138198)
chr6 (107-152)||(6423907-6423952)
chr6 (112-152)||(6427183-6427223)
chr6 (107-135)||(9412143-9412171)
[»] chr3 (1 HSPs)
chr3 (104-163)||(13469655-13469714)
[»] scaffold1155 (1 HSPs)
scaffold1155 (65-146)||(1853-1934)
[»] scaffold0345 (1 HSPs)
scaffold0345 (65-146)||(8282-8363)
[»] scaffold0105 (1 HSPs)
scaffold0105 (65-146)||(30616-30697)
[»] chr5 (1 HSPs)
chr5 (113-154)||(20477455-20477496)


Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-147; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 55907578 - 55907852
Alignment:
Q  1 ttcctacaacggtgacctcaacgcacttctctgccaaataccttttccattaaatatcacttcgctcaatctctccaaccaacctatcatccccgctact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907578 ttcctacaacggtgacctcaacgcacttctctgccaaataccttttccattaaatatcacttcgctcaatctctccaaccaacctatcatccccgctact 55907677  T
Q  101 ggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaacattgcttctctacataacaatgaccttgttcttatttctgatt 200  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  55907678 ggcttacgagctttctcccaaaatattacaactttgaattctctcatttgttccaacattgcttctctacgtaacaatgaccttgttcttatttctgatt 55907777  T
Q  201 gcttccctttccttgaagaacttgactttagtagtagtaatcctttcgctagtagagattttgatatgaatgttt 275  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  55907778 gcttccctttccttgaagaacttgacttcagtagtagtaatcctttcgctagtagagattttgatatgaatgttt 55907852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 56 - 158
Target Start/End: Complemental strand, 661956 - 661854
Alignment:
Q  56 atcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttcca 155  Q
    ||||| || |||||||||||||||||| | | ||| ||||||| ||| || ||||||||||||||| ||||||||||||| || ||||||||||||| ||    
T  661956 atcacgtcactcaatctctccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctctctcatttgttaca 661857  T
Q  156 aca 158  Q
    |||    
T  661856 aca 661854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 233
Target Start/End: Original strand, 3437630 - 3437755
Alignment:
Q  108 gagctttctcccaaaatattacaactttgacttctctcatttgttccaacattgcttctctacataacaatgaccttgttcttatttctgattgcttccc 207  Q
    |||||||||||||||| |||||||||||||| ||||||| |||||||||| ||| || ||| ||| ||    | ||  ||||||| ||||||||||||||    
T  3437630 gagctttctcccaaaagattacaactttgacctctctcagttgttccaactttgattttctccatgaccgctatctaattcttatctctgattgcttccc 3437729  T
Q  208 tttccttgaagaacttgactttagta 233  Q
    ||| ||||||| ||||||| ||||||    
T  3437730 tttacttgaagtacttgaccttagta 3437755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 126 - 226
Target Start/End: Complemental strand, 548043 - 547943
Alignment:
Q  126 ttacaactttgacttctctcatttgttccaacattgcttctctacataacaatgaccttgttcttatttctgattgcttccctttccttgaagaacttga 225  Q
    ||||||||||||  ||||||| |||||||||||||| ||||||   |||||| ||||| |||  ||| |||| |||||||||||||||||||||||||||    
T  548043 ttacaactttgaactctctcacttgttccaacattgattctctctgtaacaacgacctggtttgtatatctggttgcttccctttccttgaagaacttga 547944  T
Q  226 c 226  Q
    |    
T  547943 c 547943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 1755598 - 1755485
Alignment:
Q  109 agctttctcccaaaatattacaactttgacttctctcatttgttccaacattgcttctctacataacaatgaccttgttcttatttctgattgcttccct 208  Q
    ||||||||| ||||| |||||||||||||| |||||||  ||||||||||| |||  ||| |||| ||||||| |  | || ||| |||| || ||||||    
T  1755598 agctttctctcaaaagattacaactttgacctctctcacatgttccaacatcgctcatctccataccaatgacttcttcctcattgctgactgtttccct 1755499  T
Q  209 ttccttgaagaact 222  Q
    || |||||||||||    
T  1755498 ttgcttgaagaact 1755485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 571377 - 571330
Alignment:
Q  107 cgagctttctcccaaaatattacaactttgacttctctcatttgttcc 154  Q
    ||||| |||||||||||||||||||||||||| ||||||| |||||||    
T  571377 cgagcattctcccaaaatattacaactttgacatctctcaattgttcc 571330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 532892 - 532773
Alignment:
Q  4 ctacaacggtgacctcaacgcacttctctgccaaataccttttccattaaatatcacttcgctcaatctctccaaccaacctatcatccccgctactggc 103  Q
    ||||||||||||||||||    |||||||||||||||  |||||| || ||  |||| || ||||||||||| |||||||  | ||| ||||| | |||     
T  532892 ctacaacggtgacctcaataggcttctctgccaaatatattttcccttcaaactcacatcactcaatctctctaaccaacacaccattcccgcaaatggg 532793  T
Q  104 ttacgagctttctcccaaaa 123  Q
    |||||||| |||||| ||||    
T  532792 ttacgagccttctccaaaaa 532773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 146
Target Start/End: Complemental strand, 553806 - 553767
Alignment:
Q  107 cgagctttctcccaaaatattacaactttgacttctctca 146  Q
    ||||||||||||||||| |||||||||||||| |||||||    
T  553806 cgagctttctcccaaaacattacaactttgacctctctca 553767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 161
Target Start/End: Original strand, 8186326 - 8186422
Alignment:
Q  65 ctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaacattg 161  Q
    ||||||||||| ||| |||| | ||| || || | ||| || |||| | |||||| |||||||||||||||||| || ||||  |||||||||||||    
T  8186326 ctcaatctctctaacaaacccaccattcctgcaaatggattgcgagttctctcccgaaatattacaactttgacctcactcacatgttccaacattg 8186422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 1036514 - 1036788
Alignment:
Q  1 ttcctacaacggtgacctcaacgcacttctctgccaaataccttttccattaaatatcacttcgctcaatctctccaaccaacctatcatccccgctact 100  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1036514 ttcctacaacggtgacctcaacgcgcttctctaccaaataccttttccattaaatatcacttcgctcaatctctccaaccaacctatcatccccgctact 1036613  T
Q  101 ggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaacattgcttctctacataacaatgaccttgttcttatttctgatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||| |||||||||||||||||||    
T  1036614 ggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaacattgcttctatatgtaacaatgatcttgttcttatttctgatt 1036713  T
Q  201 gcttccctttccttgaagaacttgactttagtagtagtaatcctttcgctagtagagattttgatatgaatgttt 275  Q
    |||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  1036714 gctttcctttccttgaagaacttgacttcaatagtagtaatcctttcgctagtagagattttgatatgaatgttt 1036788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 1036320 - 1036424
Alignment:
Q  1 ttcctacaacggtgacctcaacgcacttctctgccaaataccttttccattaaatatcacttcgctcaatctctccaaccaacctatcatccccgctact 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1036320 ttcctacaacggtgacctcaacgcgcttctctgccaaataccttttccattaaatatcacttcgctcaatctctccaaccaacctatcatccccgctact 1036419  T
Q  101 ggctt 105  Q
    |||||    
T  1036420 ggctt 1036424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 45244859 - 45244909
Alignment:
Q  109 agctttctcccaaaatattacaactttgacttctctcatttgttccaacat 159  Q
    |||||||||||||| ||||| || |||||| ||||||||||||| ||||||    
T  45244859 agctttctcccaaactattagaaatttgacctctctcatttgttacaacat 45244909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 14004240 - 14004140
Alignment:
Q  57 tcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaa 156  Q
    |||| ||||||||||| ||||||||||| ||| | || |||| ||| || ||||||||||| || || |||||||||||||| || || |||||||||||    
T  14004240 tcacatcgctcaatctttccaaccaacccatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttccaa 14004141  T
Q  157 c 157  Q
    |    
T  14004140 c 14004140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 159
Target Start/End: Original strand, 17642880 - 17642996
Alignment:
Q  43 ttttccattaaatatcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttct 142  Q
    ||||||||| ||  |||| || ||||||||||||||||| |  | ||| ||| | | ||| |||| |||||||||||| ||||||||||||||||| |||    
T  17642880 ttttccattgaaactcacatcactcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactttgacctct 17642979  T
Q  143 ctcatttgttccaacat 159  Q
    |||| ||||||| ||||    
T  17642980 ctcacttgttcccacat 17642996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 17635623 - 17635712
Alignment:
Q  65 ctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttcc 154  Q
    |||||||| ||||||||||  | ||| ||  ||| ||| ||||||||||||||||  ||||||||||||||||| ||||||| |||||||    
T  17635623 ctcaatctgtccaaccaactcaccattccaactaatgggttacgagctttctcccggaatattacaactttgacctctctcacttgttcc 17635712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 57 - 157
Target Start/End: Original strand, 5766564 - 5766664
Alignment:
Q  57 tcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaa 156  Q
    |||| ||||||||||| ||||||||||  ||| | || |||| ||| || ||||||||||| || || |||||||||||||| || || |||||||||||    
T  5766564 tcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttccaa 5766663  T
Q  157 c 157  Q
    |    
T  5766664 c 5766664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 32152013 - 32151969
Alignment:
Q  109 agctttctcccaaaatattacaactttgacttctctcatttgttc 153  Q
    ||||||||||||||| |||||||||||||| ||||||| ||||||    
T  32152013 agctttctcccaaaacattacaactttgacctctctcacttgttc 32151969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 21236201 - 21236154
Alignment:
Q  107 cgagctttctcccaaaatattacaactttgacttctctcatttgttcc 154  Q
    ||||| ||||||||||||| |||||||||||| ||||||| |||||||    
T  21236201 cgagcattctcccaaaatactacaactttgacatctctcaattgttcc 21236154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 138
Target Start/End: Original strand, 18314640 - 18314678
Alignment:
Q  100 tggcttacgagctttctcccaaaatattacaactttgac 138  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  18314640 tggcttacgagttttctctcaaaatattacaactttgac 18314678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 10615763 - 10615708
Alignment:
Q  104 ttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaacat 159  Q
    |||||||||||||||||||| |||||||||||||| ||||||| ||||||| ||||    
T  10615763 ttacgagctttctcccaaaagattacaactttgacctctctcacttgttcccacat 10615708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 161
Target Start/End: Complemental strand, 7977980 - 7977866
Alignment:
Q  47 ccattaaatatcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctca 146  Q
    ||||| || ||||| || ||||||||||||||||| |||| ||| || |||  ||| || | || |||||||||||||||| |||||||||| || ||||    
T  7977980 ccattgaaaatcacgtcactcaatctctccaaccaccctaccattccggcttatgggttgccagttttctcccaaaatattgcaactttgacctcactca 7977881  T
Q  147 tttgttccaacattg 161  Q
      ||||| |||||||    
T  7977880 aatgttctaacattg 7977866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 156
Target Start/End: Complemental strand, 7555278 - 7555196
Alignment:
Q  74 tccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaa 156  Q
    ||||||||||| | |||||| || | ||| || ||||||||||||||||||||||||||||| || || |||| |||||||||    
T  7555278 tccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 7555196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 33161260 - 33161200
Alignment:
Q  92 cccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgtt 152  Q
    ||||||| |||||| ||| ||||||||||||  |||| ||||||||||||||||| |||||    
T  33161260 cccgctaatggcttgcgaactttctcccaaaccattaaaactttgacttctctcacttgtt 33161200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 9581737 - 9581685
Alignment:
Q  107 cgagctttctcccaaaatattacaactttgacttctctcatttgttccaacat 159  Q
    ||||||||||||  ||| |||||||| ||||| |||||||||||||| |||||    
T  9581737 cgagctttctccgtaaagattacaacgttgacatctctcatttgttcgaacat 9581685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 6417142 - 6417087
Alignment:
Q  104 ttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaacat 159  Q
    |||||||||||||||||||| | |||||||||||| ||||||| ||||||| ||||    
T  6417142 ttacgagctttctcccaaaagaatacaactttgacctctctcacttgttcccacat 6417087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 7132352 - 7132300
Alignment:
Q  107 cgagctttctcccaaaatattacaactttgacttctctcatttgttccaacat 159  Q
    ||||||||||||||||| |||||||||||| | ||||||  ||||||||||||    
T  7132352 cgagctttctcccaaaacattacaactttggcatctctcgattgttccaacat 7132300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 152
Target Start/End: Complemental strand, 6395582 - 6395539
Alignment:
Q  109 agctttctcccaaaatattacaactttgacttctctcatttgtt 152  Q
    |||| ||||||||||||||||||||||||| ||||||| |||||    
T  6395582 agctctctcccaaaatattacaactttgacctctctcagttgtt 6395539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 7135275 - 7135224
Alignment:
Q  107 cgagctttctcccaaaatattacaactttgacttctctcatttgttccaaca 158  Q
    ||||||||||||||||| |||||||||||| | ||||||  |||||||||||    
T  7135275 cgagctttctcccaaaacattacaactttggcatctctcgattgttccaaca 7135224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 7138198 - 7138147
Alignment:
Q  107 cgagctttctcccaaaatattacaactttgacttctctcatttgttccaaca 158  Q
    ||||||||||||||||| |||||||||||| | ||||||  |||||||||||    
T  7138198 cgagctttctcccaaaacattacaactttggcatctctcgattgttccaaca 7138147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 152
Target Start/End: Complemental strand, 6423952 - 6423907
Alignment:
Q  107 cgagctttctcccaaaatattacaactttgacttctctcatttgtt 152  Q
    ||||||||||||||||| || ||||||||||| ||||||| |||||    
T  6423952 cgagctttctcccaaaacataacaactttgacctctctcacttgtt 6423907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 152
Target Start/End: Complemental strand, 6427223 - 6427183
Alignment:
Q  112 tttctcccaaaatattacaactttgacttctctcatttgtt 152  Q
    ||||||||||||||||||||||||||| | ||||| |||||    
T  6427223 tttctcccaaaatattacaactttgacctttctcacttgtt 6427183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 107 - 135
Target Start/End: Complemental strand, 9412171 - 9412143
Alignment:
Q  107 cgagctttctcccaaaatattacaacttt 135  Q
    |||||||||||||||||||||||||||||    
T  9412171 cgagctttctcccaaaatattacaacttt 9412143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 13469655 - 13469714
Alignment:
Q  104 ttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaacattgct 163  Q
    |||||||||||||||||||| | ||||||  |||| ||||||| ||||||| ||||||||    
T  13469655 ttacgagctttctcccaaaagaatacaacgctgacctctctcacttgttcccacattgct 13469714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1155 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1155
Description:

Target: scaffold1155; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 1853 - 1934
Alignment:
Q  65 ctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctca 146  Q
    |||||||||||| ||||||| || || |||||   ||| || |||| ||| |||||||||||||||||||||| | ||||||    
T  1853 ctcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaactttgaatactctca 1934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 146
Target Start/End: Complemental strand, 8363 - 8282
Alignment:
Q  65 ctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctca 146  Q
    |||||||||||| ||||||| || || |||||   ||| || |||| ||| |||||||||||||||||||||| | ||||||    
T  8363 ctcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaactttgaatactctca 8282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 30616 - 30697
Alignment:
Q  65 ctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctca 146  Q
    |||||||||||| ||||||| || || |||||   ||| || |||| ||| |||||||||||||||||||||| | ||||||    
T  30616 ctcaatctctcctaccaacccataattcccgcagatgggttgcgagttttatcccaaaatattacaactttgaatactctca 30697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 20477455 - 20477496
Alignment:
Q  113 ttctcccaaaatattacaactttgacttctctcatttgttcc 154  Q
    |||||||||||||||| ||||||||| ||||||| |||||||    
T  20477455 ttctcccaaaatattaaaactttgacctctctcagttgttcc 20477496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University