View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9053_low_5 (Length: 449)
Name: NF9053_low_5
Description: NF9053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9053_low_5 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 17 - 449
Target Start/End: Original strand, 46284267 - 46284694
Alignment:
| Q |
17 |
atacaatgtttatccaatgattttgatttatacactgtgttggcgtcgtcgaatgcatgaaattctaactgcagaaaatttagatctgtaagatagatat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46284267 |
atacaatgtttatccaatgattttgatttacacactgtgttggcgtc---gaatgcatgaaattctaactgcagaaaatttagatctgtaagatagatat |
46284363 |
T |
|
| Q |
117 |
cttctttcttttacatggctggtgtagctgacctggatgaacaatgaacccatagtagtctaactgccaatatctggacattggtagtttcatggttaag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
46284364 |
cttctttcttttacatggctggtgtagctgacctggatgaacaatgaacccatagtagtctaactgccaatatctggatattggtagtttcatggttaag |
46284463 |
T |
|
| Q |
217 |
ttattgtgaggaaaacttataatttttttaaaaaagttgtgttggtcttgtnnnnnnnnnnngggtttgtgttggtgagagttatgctgcattgaataat |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
46284464 |
ttattgtgaggaaaacttataatttttttaaaaaagttgtgttggtcttgtaaaaaaaaaa--ggtttgtgttggtgagagttatgctgcattgaataaa |
46284561 |
T |
|
| Q |
317 |
tctctattggttttaaaagtttgctcatgaagctgggtattgttttacttgaatgagtgaatttaactcagaacggggaaattgcacatggaaggaacat |
416 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46284562 |
tctctattggttttaaaagtttgctcgtgaagctgggtattgttttacttgaatgagtgaatttaactcagaacggggaaattgcacatggaaggaacat |
46284661 |
T |
|
| Q |
417 |
aataaacatactttctcaagaattctctctttt |
449 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |
|
|
| T |
46284662 |
aacaaacatactttctcaagaattctctctttt |
46284694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 46284729 - 46284770
Alignment:
| Q |
408 |
aaggaacataataaacatactttctcaagaattctctctttt |
449 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||| |
|
|
| T |
46284729 |
aaggaacttaacaaacatactttctcaagaattctctctttt |
46284770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University