View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9053_low_6 (Length: 417)
Name: NF9053_low_6
Description: NF9053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9053_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 15494369 - 15493986
Alignment:
| Q |
18 |
cttatcggagcttattagtgcccatccaagcttgatatgggagatggatagcaaaaatcaaactatattacacatagctgttttgcatcggcatgctagt |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15494369 |
cttatcggagcttattagtgcccatccaagcttgatatgggagatggatagcaaaaatcgaactatattacacatagctgttttgcatcggcatgctagt |
15494270 |
T |
|
| Q |
118 |
atattcaatctcgtacatcaaatagggcatataaaggatctcatagtgacatttgatgatgaagacagaaacactatattacacttggctgcaaaattag |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15494269 |
atattcaatctcgtacatcaaatagggcatataaaggatgtcatagtgacatttgaagatgaagacagaaacactatattacacttggctgcaaaattag |
15494170 |
T |
|
| Q |
218 |
caccacgagctcaacttgaattggtttctggagcagcttttcaaatgtgtgtcgagttagtatggtttgaggtacatgtaatgcaaccgttttatcttat |
317 |
Q |
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||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15494169 |
cacgacgaggtcaacttgaattggtttctggagcagcttttcaaatgtgtgtcgagttagtatggtttgaggtacatgtaatgcaaccgttttatcttat |
15494070 |
T |
|
| Q |
318 |
ggctttgcattttcaattttggctcctctggatggaccctcaatttagacgaggctggcctacgcgcctgatcctattttaact |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15494069 |
ggctttgcattttcaattttggctcctctggatggaccctcaatttagacgaggctggcctacgtgcctgatcctattttaact |
15493986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 15518156 - 15517883
Alignment:
| Q |
18 |
cttatcggagcttattagtgcccatccaagcttgatatgggagatggatagcaaaaatcaaactatattacacatagctgttttgcatcggcatgctagt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| |||||||||||||||||||||||||||||||||||| ||| |
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| T |
15518156 |
cttatcggagcttattagtgcccatccaagcttgatatgggaggtggattgcgaaaatcgaactatattacacatagctgttttgcatcggcatgccagt |
15518057 |
T |
|
| Q |
118 |
atattcaatctcgtacatcaaatagggcatataaaggatctcatagtgacatttgatgatgaagacagaaacactatattacacttggctgcaaaattag |
217 |
Q |
| |
|
|| |||||| || |||||||||||||||||||||||||| |||||||||||||||| || || || |||||| | |||| ||||| |||| |||||||| |
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| T |
15518056 |
atcttcaatgtcatacatcaaatagggcatataaaggatatcatagtgacatttgaagacgatgaaggaaacagtttattgcacttagctggaaaattag |
15517957 |
T |
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| Q |
218 |
caccacgagctcaacttgaattggtttctggagcagcttttcaaatgtgtgtcgagttagtatggtttgaggta |
291 |
Q |
| |
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|||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
15517956 |
caccacaaggtcaacttgaattggtttctggtgcagcttttcaaatgtgtgtcgagttattatggtttgaggta |
15517883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 41 - 304
Target Start/End: Complemental strand, 15655282 - 15655016
Alignment:
| Q |
41 |
atccaagcttgatatgggagatggatagcaaaaatcaaactatattacacatagctgttttgcatcggcatgctagtatattcaatctcgtacatcaaat |
140 |
Q |
| |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
15655282 |
atcctagcttgatatgggatgtggatagcaaaaatcaaactatattacacatagctgttttgcatcggcatgctagtatcttcaatctcgtacatcaaat |
15655183 |
T |
|
| Q |
141 |
agggcatataaaggatctcatagtgacattt---gatgatgaagacagaaacactatattacacttggctgcaaaattagcaccacgagctcaacttgaa |
237 |
Q |
| |
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||||||||| |||| | ||||||| |||| | |||||| | |||||||||||| |||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
15655182 |
agggcatattaagggtatcatagtaacatatgaagatgataatgacagaaacactttattgcacttggctgcaaaattagcaccacgaagtcaacttgaa |
15655083 |
T |
|
| Q |
238 |
ttggtttctggagcagcttttcaaatgtgtgtcgagttagtatggtttgaggtacatgtaatgcaac |
304 |
Q |
| |
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|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
15655082 |
ttggtttctggagctgcttttcaaatgtgcgtcgagttagtatggtttgaggtacatgcaatgcaac |
15655016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 41 - 310
Target Start/End: Complemental strand, 15646130 - 15645858
Alignment:
| Q |
41 |
atccaagcttgatatgggagatggatagcaaaaatcaaactatattacacatagctgttttgcatcggcatgctagtatattcaatctcgtacatcaaat |
140 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
15646130 |
atcctagcttgatatgggatgtggatagcaaaaaccgaactatattacacatagctgttttgcatcggcatgctagtatcttcaatctggtacatcaaat |
15646031 |
T |
|
| Q |
141 |
agggcatataaaggatctcatagtgacatttga---tgatgaagacagaaacactatattacacttggctgcaaaattagcaccacgagctcaacttgaa |
237 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||| |||||| ||||||||||| |||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
15646030 |
agggcatataaagggtatcatagtgacatatgaaaatgatgatgacagaaacacactattgcacttggctgcaaaattagcaccacgaaatcaacttgaa |
15645931 |
T |
|
| Q |
238 |
ttggtttctggagcagcttttcaaatgtgtgtcgagttagtatggtttgaggtacatgtaatgcaaccgtttt |
310 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||| ||||||||| |||| |
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|
| T |
15645930 |
ttggtttctggagctgcttttcaaatgtgcgtcgagttactatggtttgaggtacatgcaatgcaaccctttt |
15645858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 15534969 - 15534698
Alignment:
| Q |
19 |
ttatcggagcttattagtgcccatccaagcttgatatgggagatggatagcaaaaatcaaactatattacacatagctgttttgcatcggcatgctagta |
118 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||||| || |||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
15534969 |
ttatcggagcttattagtgct-atccaagcttgatatgggaggtggatggcgaaaatcgaacgatattacacatagctgttttgcatcggcatgctagta |
15534871 |
T |
|
| Q |
119 |
tattcaatctcgtacatcaaatagggcatataaaggatctcatagtgacatttgatgatgaagacagaaacactatattacacttggctgcaaaattagc |
218 |
Q |
| |
|
| |||||| ||||||||||||||||||| ||||||||| |||||| ||||| || |||||| | |||||||| |||| |||||||||||||||||||| |
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| T |
15534870 |
tcttcaatgtcgtacatcaaatagggcacataaaggatatcatagcgacatatgttgatgataaaggaaacactttattgcacttggctgcaaaattagc |
15534771 |
T |
|
| Q |
219 |
accacgagctcaacttgaattggtttctggagcagcttttcaaatgtgtgtcgagttagtatggtttgaggta |
291 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||| |
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|
| T |
15534770 |
accacgaggtcaacttgaattggtttctggagcagcttttcaaatgtgccttgagttattatggtttgaggta |
15534698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 18 - 310
Target Start/End: Complemental strand, 15625755 - 15625463
Alignment:
| Q |
18 |
cttatcggagcttattagtgcccatccaagcttgatatgggagatggatagcaaaaatcaaactatattacacatagctgttttgcatcggcatgctagt |
117 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||| ||| | | |
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|
| T |
15625755 |
cttatcggagcttattagtgtttatcctagcttgatatgggatgtggatagcaaaaatcgaactatattacacatagctgtattgcatcggtatgttgct |
15625656 |
T |
|
| Q |
118 |
atattcaatctcgtacatcaaatagggcatataaaggatctcatagtgacatttgatgatgaagacagaaacactatattacacttggctgcaaaattag |
217 |
Q |
| |
|
|| | |||| | |||||||||||||||||||||||| | |||||||||||||||| ||||| |||||||||||| |||| ||||||||||||||||||| |
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|
| T |
15625655 |
atctacaatgttatacatcaaatagggcatataaagggtatcatagtgacatttgaagatgatgacagaaacactttattgcacttggctgcaaaattag |
15625556 |
T |
|
| Q |
218 |
caccacgagctcaacttgaattggtttctggagcagcttttcaaatgtgtgtcgagttagtatggtttgaggtacatgtaatgcaaccgtttt |
310 |
Q |
| |
|
|||||| || ||||||||||||||||||||| |||||||||||||||| | |||||| |||||||||||||||||| ||||||||| |||| |
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|
| T |
15625555 |
caccacaagttcaacttgaattggtttctgggtcagcttttcaaatgtgccttgagttattatggtttgaggtacatgcaatgcaaccctttt |
15625463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 15605821 - 15605601
Alignment:
| Q |
18 |
cttatcggagcttattagtgcccatccaagcttgatatgggagatggatagcaaaaatcaaactatattacacatagctgttttgcatcggcatgctagt |
117 |
Q |
| |
|
|||||| |||||||| |||| |||| |||||||||||||| ||||| ||||||||| ||||||||||||||||||||| ||| |||||||| |||| |
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|
| T |
15605821 |
cttatcagagcttatcagtgtttatcctagcttgatatgggatgtggattgcaaaaatcgaactatattacacatagctgtcttgaatcggcattatagt |
15605722 |
T |
|
| Q |
118 |
atattcaatctcgtacatcaaatagggcatataaaggatctcatagtgacatttg---atgatgaagacagaaacactatattacacttggctgcaaaat |
214 |
Q |
| |
|
|| |||||| || |||||||||| ||||||||||||| | ||||| |||||| || |||||||||||||||||||| |||| |||||||||||||||| |
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|
| T |
15605721 |
atcttcaatttcatacatcaaatggggcatataaagggtttcatattgacatatgaaaatgatgaagacagaaacactttattgcacttggctgcaaaat |
15605622 |
T |
|
| Q |
215 |
tagcaccacgagctcaacttg |
235 |
Q |
| |
|
||||||||| || |||||||| |
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| T |
15605621 |
tagcaccacaagttcaacttg |
15605601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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