View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9054_low_11 (Length: 289)
Name: NF9054_low_11
Description: NF9054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9054_low_11 |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0642 (1 HSPs) |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 51240 - 50970
Alignment:
| Q |
18 |
caaaaggaaactcataaaag-atgatctttagtttaaaagctaaagagatggaaagaaatgtattcaacccaattagggggagaagaagtgttaaagggt |
116 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
51240 |
caaaaggaaactcataaaaggatgatctttagtttaaa-gctaaagagatggaaaaaaatgtattcaacccaattagggggcgaagaagtgttaaagagt |
51142 |
T |
|
| Q |
117 |
ctaaaatgtcaagactctgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaaacaaagattttaactgccatacacat |
216 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
51141 |
ctaaaatgtcaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgca-aaaacaaagattttaactgccatacacat |
51043 |
T |
|
| Q |
217 |
atcagaacttcagaagcacttggattcctgctgatagaaaattagtggnnnnnnngatctgaaatgcatccac |
289 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
51042 |
atcagaacttcagaagcacttggattcctgctgatagaaaattagtggaaaaaaagatctgaaatgcatccac |
50970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0642 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0642
Description:
Target: scaffold0642; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 6713 - 6981
Alignment:
| Q |
18 |
caaaaggaaactcataaaag-atgatctttagtttaaaagctaaagagatggaaagaaatgtattcaacccaattagggggagaagaagtgttaaagggt |
116 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6713 |
caaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagatggaaaaaaatgtattcaacccaattagggggagaa---gtgttaaagggt |
6809 |
T |
|
| Q |
117 |
ctaaaatgtcaagactctgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaaacaaagattttaactgccatacacat |
216 |
Q |
| |
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||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6810 |
ctaaaatgttaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgc-aaaaacaaagattttaactgccatacacat |
6908 |
T |
|
| Q |
217 |
atcagaacttcagaagcacttggattcctgctgatagaaaattagtggnnnnnnngatctgaaatgcatccac |
289 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6909 |
atcaaaacttcagaagcacttggattcctgctgatagaaaattagtggaaaaaaagatctgaaatgcatccac |
6981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 16626 - 16894
Alignment:
| Q |
18 |
caaaaggaaactcataaaag-atgatctttagtttaaaagctaaagagatggaaagaaatgtattcaacccaattagggggagaagaagtgttaaagggt |
116 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
16626 |
caaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagatggaaaaaaatgtattcaacccaattagggggagaa---gtgttaaagggt |
16722 |
T |
|
| Q |
117 |
ctaaaatgtcaagactctgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaaacaaagattttaactgccatacacat |
216 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
16723 |
ctaaaatgttaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgc-aaaaacaaagattttaactgccatacacat |
16821 |
T |
|
| Q |
217 |
atcagaacttcagaagcacttggattcctgctgatagaaaattagtggnnnnnnngatctgaaatgcatccac |
289 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
16822 |
atcaaaacttcagaagcacttggattcctgctgatagaaaattagtggaaaaaaagatctgaaatgcatccac |
16894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 22356 - 22088
Alignment:
| Q |
18 |
caaaaggaaactcataaaag-atgatctttagtttaaaagctaaagagatggaaagaaatgtattcaacccaattagggggagaagaagtgttaaagggt |
116 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
22356 |
caaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagatggaaaaaaatgtattcaacccaattagggggagaag---tgttaaagggt |
22260 |
T |
|
| Q |
117 |
ctaaaatgtcaagactctgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaaacaaagattttaactgccatacacat |
216 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22259 |
ctaaaatgttaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgca-aaaacaaagattttaactgccatacacat |
22161 |
T |
|
| Q |
217 |
atcagaacttcagaagcacttggattcctgctgatagaaaattagtggnnnnnnngatctgaaatgcatccac |
289 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
22160 |
atcaaaacttcagaagcacttggattcctgctgatagaaaattagtggaaaaaaagatctgaaatgcatccac |
22088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 44498330 - 44498598
Alignment:
| Q |
18 |
caaaaggaaactcataaaag-atgatctttagtttaaaagctaaagagatggaaagaaatgtattcaacccaattagggggagaagaagtgttaaagggt |
116 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
44498330 |
caaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagatggaaaaaaatgtattcaacccaactagggggagaa---gtgttaaagggt |
44498426 |
T |
|
| Q |
117 |
ctaaaatgtcaagactctgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaaacaaagattttaactgccatacacat |
216 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
44498427 |
ctaaaatgttaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgc-aaaaacaaagattttaactgccatacacat |
44498525 |
T |
|
| Q |
217 |
atcagaacttcagaagcacttggattcctgctgatagaaaattagtggnnnnnnngatctgaaatgcatccac |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44498526 |
atcagaacttcagaagcacttggattcctgctgatagaaaattagtggaaaaaaagatctgaaatgcatccac |
44498598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 3380933 - 3381200
Alignment:
| Q |
18 |
caaaaggaaactcataaaag-atgatctttagtttaaaagctaaagagatggaaagaaatgtattcaacccaattagggggagaagaagtgttaaagggt |
116 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
3380933 |
caaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagatggaaaaaaatgtattcaacccaattagggg----agaagtgttaaaggga |
3381028 |
T |
|
| Q |
117 |
ctaaaatgtcaagactctgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaaacaaagattttaactgccatacacat |
216 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
3381029 |
ctaaaatgtcaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgc-aaaaacaaagattttaactgccaaacacat |
3381127 |
T |
|
| Q |
217 |
atcagaacttcagaagcacttggattcctgctgatagaaaattagtggnnnnnnngatctgaaatgcatccac |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3381128 |
atcagaacttcagaagcacttggattcctgctgatagaaaattagtggaaaaaaagatctgaaatgcatccac |
3381200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 15708869 - 15709112
Alignment:
| Q |
18 |
caaaaggaaactcataaaag-atgatctttagtttaaaagctaaagagatggaaagaaatgtattcaacccaattagggggagaagaagtgttaaagggt |
116 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
15708869 |
caaaaggaaactcataaaaggatgatctttagtttaaaagctaaagagatggaaaaaaatgtattcaacccaattagggggagaa---gtgttaaagggt |
15708965 |
T |
|
| Q |
117 |
ctaaaatgtcaagactctgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaaacaaagattttaactgccatacacat |
216 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15708966 |
ctaaaatgttaagactgtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgc-aaaaacaaagattttaactgccatacacat |
15709064 |
T |
|
| Q |
217 |
atcagaacttcagaagcacttggattcctgctgatagaaaattagtgg |
264 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15709065 |
atcaaaacttcagaagcacttggattcctgctgatagaaaattagtgg |
15709112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 33 - 223
Target Start/End: Complemental strand, 26795911 - 26795723
Alignment:
| Q |
33 |
aaaagatgatctttagtttaaaagctaaagagatggaaagaaatgtattcaacccaattagggggagaagaagtgttaaagggtctaaaatgtcaagact |
132 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||| | ||| ||||||| |||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
26795911 |
aaaagatgatctttagttaaaaagctaaagggatggaaa-agatgcattcaacacaattaggggaagaagaagtgttaaagggtccaaaatgtcaagact |
26795813 |
T |
|
| Q |
133 |
ctgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgcaaaaaacaaagattttaactgccatacacatatcagaa |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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|
| T |
26795812 |
gtgggaaccaagcaaagaaggattgtgcatactcaaggtgcagaagttgctgca-aaaacaaaggttttaactgccatacacatatcagaa |
26795723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 226 - 264
Target Start/End: Complemental strand, 30112170 - 30112132
Alignment:
| Q |
226 |
tcagaagcacttggattcctgctgatagaaaattagtgg |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30112170 |
tcagaagcacttggattcctgctgatagaaaattagtgg |
30112132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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