View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9054_low_13 (Length: 238)
Name: NF9054_low_13
Description: NF9054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9054_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 5968799 - 5968984
Alignment:
| Q |
15 |
cacagaggaacagtgagattcaaaagtatgactcaatcgtttataaatttacttcggcaatatttagagaagaaatgcatgactcaaaagcaattttact |
114 |
Q |
| |
|
|||| |||||| |||||||||||||| |||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5968799 |
cacaaaggaactgtgagattcaaaagcatgactcaatcgcttataaatttacttgagcaatattgagagaagaaatgcatgactcaaaagcaattttact |
5968898 |
T |
|
| Q |
115 |
tcaacaatattggcaccataaattgacacccacataatgaatttactgctaatgaaagnnnnnnncacaattacaaaagacggaag |
200 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5968899 |
tcaacgatattggcaccacaaattgacacccacataatgaatttactgctaatgaaagaaaaaaaaacaattacaaaagacggaag |
5968984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 172
Target Start/End: Original strand, 46086620 - 46086783
Alignment:
| Q |
15 |
cacagaggaacagtgagattcaaaagtatgactcaatcgtttataaatttacttcggcaatatttagagaagaaatgcatgactcaaaagcaattttact |
114 |
Q |
| |
|
|||| |||||| ||| |||||||||| || | ||||||| |||| |||||||||| ||||||| ||||||| |||||||||||||||| |||||||| | |
|
|
| T |
46086620 |
cacaaaggaactgtgtgattcaaaagcattattcaatcgcttatgaatttacttcaacaatattgagagaaggaatgcatgactcaaaaacaattttatt |
46086719 |
T |
|
| Q |
115 |
tcaacaatattggcaccataaattg---acacccacata---atgaatttactgctaatgaaag |
172 |
Q |
| |
|
|||| ||||||||||||| |||||| ||| ||||||| ||||||||||| |||||||||| |
|
|
| T |
46086720 |
tcaagaatattggcaccacaaattgaccacatccacataatcatgaatttactactaatgaaag |
46086783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 22 - 137
Target Start/End: Complemental strand, 30732548 - 30732433
Alignment:
| Q |
22 |
gaacagtgagattcaaaagtatgactcaatcgtttataaatttacttcggcaatatttagagaagaaatgcatgactcaaaagcaattttacttcaacaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30732548 |
gaacagtgagattcaaaagtatgactcaatcgtttataaatttacttcagcaatatttagagaagaaatgcatgactcaaaagcaattttacttcaacaa |
30732449 |
T |
|
| Q |
122 |
tattggcaccataaat |
137 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
30732448 |
tattggcaccataaat |
30732433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 130 - 222
Target Start/End: Complemental strand, 30731782 - 30731690
Alignment:
| Q |
130 |
ccataaattgacacccacataatgaatttactgctaatgaaagnnnnnnncacaattacaaaagacggaaggaataaatattgatgaatttta |
222 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30731782 |
ccataaattgacacccacataatgaatttcctgctaatgaaagaaaaaaacacaattacaaaagacggaaggaacaaatattgatgaatttta |
30731690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University