View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9054_low_14 (Length: 232)
Name: NF9054_low_14
Description: NF9054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9054_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 10 - 214
Target Start/End: Original strand, 5701587 - 5701791
Alignment:
| Q |
10 |
gtagattatacttatatcttgtcaaattttatatttataacgtatgtataattatattgttaattcaaagaactatgatggaaaaattcctagctactca |
109 |
Q |
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| T |
5701587 |
gtagtttatacttatatcttgtcaaattttatatatataatgtatgtataattatattgttaattcaaagaactacgacggaaaaattcccagctactca |
5701686 |
T |
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| Q |
110 |
agagtactcaatcatatgctagtagggaagtgagaattattgcccagccactcctcatgtcgctttgggaagtgagaatatgtttaaccaatacgaatga |
209 |
Q |
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| T |
5701687 |
agagtactcaatcatatgctagtagggaagtgagaattattgcccggccactcctcatgtcgctttgggaagtgagaatatgtttaaccaatacgaatga |
5701786 |
T |
|
| Q |
210 |
aaatg |
214 |
Q |
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||||| |
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| T |
5701787 |
aaatg |
5701791 |
T |
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