View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9054_low_3 (Length: 639)
Name: NF9054_low_3
Description: NF9054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9054_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 523; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 43 - 622
Target Start/End: Original strand, 52150664 - 52151245
Alignment:
| Q |
43 |
ctactatctatgttgaggttcacgttttcaatttaatttgattacgatcgttataatttctattgtatttacaggcattgttactcattttaacacaata |
142 |
Q |
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| T |
52150664 |
ctactttctatgttgaggttcacgttttcaatttaatttgataacgatcgttataatt-ctattgtatttacaggcattgttactcattttaacacaata |
52150762 |
T |
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| Q |
143 |
gactacagtgagcaattgttaggagaaaaccatgcatattgacatgtatattcacttccaaccaagtgaaacaattcagaggggaatatttttctcatat |
242 |
Q |
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| T |
52150763 |
gactagagtgagcaattgttaggagaaaaccatgcatattgacatgtatattcacttccacccaagtgaaacaattcagaggggaatatttttctcatat |
52150862 |
T |
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| Q |
243 |
ctgtaaattttgaaaaggacaatgaaaaaacaaaattaatttatgaggtcagtgtacgtattggccaggttttaataaacaccgacata----atatcca |
338 |
Q |
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| T |
52150863 |
ctgtaaattttgaaaaggacaatgaaaaaacaaaattaatttatgaggtcagtgtacgtattggccaggttttaataaacaccgacataatatatatcca |
52150962 |
T |
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| Q |
339 |
tagttttgtatgttagagaaaaagacgaggaagagcaaaagaagcagaagcaactctcaacaggccccctgctaaggaccgaacagaatagccaaaacta |
438 |
Q |
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| T |
52150963 |
tagttttgtatgttagagaaaaagacgaggaagagcaaaagaagcagaagcaactctcaacagg-cccctgctaaggaccgaacagaatagccaaaacta |
52151061 |
T |
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| Q |
439 |
tttttgaaacatatctcaatctcggtcatcttgctttggtgagagaaggctgcatacatattgcatttcagccaaccaacttatgggttagccaacttct |
538 |
Q |
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| T |
52151062 |
tttttgaaacatatctcaatctcagtcatcttgctttggtgagagaaggctgcatacatattgcatttcagccagccaacttatgggttagccaacttct |
52151161 |
T |
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| Q |
539 |
catcctccacgggctcgtgcgtccccacgcccttgcccgcagatcgagctattttccatttcccatcaacagaattgaccgatt |
622 |
Q |
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| T |
52151162 |
catcctccacgggctcgtgcgtccccacgcccttgcccgcagatcaagctattttccatttcccatcaacagaattgaccgatt |
52151245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 204 - 288
Target Start/End: Original strand, 52158228 - 52158312
Alignment:
| Q |
204 |
ccaagtgaaacaattcagaggggaatatttttctcatatctgtaaattttgaaaaggacaatgaaaaaacaaaattaatttatga |
288 |
Q |
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| T |
52158228 |
ccaagtgaaatagttcaaaggggaatatttttctaatatctgtaaatttagaaacagacaatgagaaagaaaaataaattaatga |
52158312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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