View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9054_low_4 (Length: 625)
Name: NF9054_low_4
Description: NF9054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9054_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 292 - 602
Target Start/End: Original strand, 35681022 - 35681335
Alignment:
| Q |
292 |
aactcgccagctgctcgaaggcatagtcgtgctcttgcactctgaaatcagtttcagcnnnnnnnnnntcgtcaaacac----acacacataagctagct |
387 |
Q |
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| T |
35681022 |
aactcgccagctgctcgaaggcatagtcgtgctcttgcgctctgaaatcagtttcagcaaaaaaaaa-tcgtcacacacacacacacacataagctagct |
35681120 |
T |
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| Q |
388 |
aaattatgctgtctaattttatgtctgtataatatctatcataatgaaggacatatagagtgagagtagaagatgcaaaaggagttattcttgaccatac |
487 |
Q |
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| T |
35681121 |
aaattatgctgtctaattttatgtctgtataatatctatcatattgaaggacatatagagtgagagtagaagatgcaaaaggagttattcttgaccatac |
35681220 |
T |
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| Q |
488 |
aatcgtaaatggatggtcaacattaacttctctcacaataacatgctctaaccaaggtttaaaatcatggtcgagtgtcacgccgtgatgcaaccataat |
587 |
Q |
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| T |
35681221 |
aatcgtaaatggatggtcaacattaacttctctcacaataacatgctctaaccaaggtttaaaatcatggtcgagtgtcacgccgtgatgcaaccataat |
35681320 |
T |
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| Q |
588 |
tgcagtcgcagtgca |
602 |
Q |
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| T |
35681321 |
tgcagtcgcagtgca |
35681335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 35680744 - 35680981
Alignment:
| Q |
14 |
cgtgttcaatccattcttttttcccttcaaactcatctggcagttcatacctcttcagcatttcaatgatctcatcccatactcctgcaagcacaagtct |
113 |
Q |
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| T |
35680744 |
cgtgttcaatccattcttttttcccttcaaactcatctggcagttcatacctcttcagcatttcaatgatctcatcccatactcctgcaagcacaagtct |
35680843 |
T |
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| Q |
114 |
cttcacgtttgcttggaaatcctttggctccttttgcaccttgaaggcatcataataaccttttccgttgtttatctcacatgttgatttgtactcttcc |
213 |
Q |
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| T |
35680844 |
cttcacgtttgcttggaaatcctttggctccttttgcaccttgaaggcatcataataaccttttccgttgtttatctcacatgttgatttgtactcttcc |
35680943 |
T |
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| Q |
214 |
aaatccctcatgcttggcacagccttatcctgaaattc |
251 |
Q |
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| T |
35680944 |
aaatccctcatgcttggcacagccttatcctgaaattc |
35680981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 35447565 - 35447500
Alignment:
| Q |
69 |
cagcatttcaatgatctcatcccatactcctgcaagcacaagtctcttcacgtttgcttggaaatc |
134 |
Q |
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| T |
35447565 |
cagcttttcgattatctcatcccatactcctgcaagttctagcctctgcacatttgcttggaaatc |
35447500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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