View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9054_low_9 (Length: 348)
Name: NF9054_low_9
Description: NF9054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9054_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 5585050 - 5584871
Alignment:
| Q |
1 |
ctggtgagcaaacgtaatattaaagattgtactaatatagttagaagttccaaatgacgtgtgatagtagagagtaaaaatatggtcattctagtcccac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5585050 |
ctggtgagcaaacgtaatattaaagattgtactaatatacttaaaagttccaaatgacgtgtgatagtagagagtaaaaatatggtcattctagtccaac |
5584951 |
T |
|
| Q |
101 |
atcgctagcaaagaaacataacatatgaacttgttctatatagtataatacaatacagcatacgaaacatcaactaacgt |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
5584950 |
atcgctagcaaagaaacataacatatgaacttgttctatataatataataaaatacggcatatgaaacatcaactaacgt |
5584871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 12074242 - 12074323
Alignment:
| Q |
59 |
gtgtgatagtagagagtaaaaatatggtcattctagtcccacatcgctagcaaagaaacataacatatgaacttgttctatata |
142 |
Q |
| |
|
|||||| |||||||||||||||||||| || |||||||| || ||||| |||||||||||||| |||| |||||||||||| |
|
|
| T |
12074242 |
gtgtgaaagtagagagtaaaaatatggc--ttttagtcccatattgctaggaaagaaacataacacgtgaagttgttctatata |
12074323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 1085675 - 1085724
Alignment:
| Q |
77 |
aaaatatggtcattctagtcccacatcgctagcaaagaaacataacatatg |
127 |
Q |
| |
|
||||||||||| || ||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1085675 |
aaaatatggtcttt-tagtcccacatttctagcaaagaaacataacatatg |
1085724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 142
Target Start/End: Original strand, 12053758 - 12053856
Alignment:
| Q |
42 |
tagaagttccaaatgacgtgtgatagtagagagtaaaaatatggtcattctagtcccacatcgctagcaaagaaacataacatatgaacttgttctatat |
141 |
Q |
| |
|
||||||| |||| ||| |||||| ||||||||||| |||||||| || |||||||| || ||| |||||||||||||| | |||| || |||||||| |
|
|
| T |
12053758 |
tagaagtgccaagtgaggtgtgaaagtagagagtataaatatgg--cttttagtcccatattgcttgcaaagaaacataatacgtgaagtttttctatat |
12053855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University