View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9055_high_10 (Length: 441)
Name: NF9055_high_10
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9055_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Original strand, 22790139 - 22790565
Alignment:
| Q |
1 |
ataaatcattgaaagttaagtttagtaaaa-ggatgtcacggtttggtttctgtaaaattttggtacctcttttgttttgtgagtgaatacagttataga |
99 |
Q |
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| T |
22790139 |
ataaatcattgaaagttaagtttagtaaaaaggatgtcacggtttggtttctgtaaaattttggtacctcttttgttttgtgagtgaatacagttataga |
22790238 |
T |
|
| Q |
100 |
aaaaatagaatatatataagtccaagagccatgtgaagttttgaaacataggtatggaaacccaaaccttttagacaattattcgtgttttcatttcata |
199 |
Q |
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| T |
22790239 |
aaaaatagaatatatataagtccaagagccatgtgaagttttgaaacataggtatggaaacccaaacctttgagacaattattcgtgttttcatttcata |
22790338 |
T |
|
| Q |
200 |
atatatttttctcatttgtcatcctcttctacaccattatttatcaatcatttctagaaatcaacttctatattgtgtttatattatatatatggtacgt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22790339 |
atatatttttctcatttgtcatcctcttctacaccattatttatcaatcatttctagaaatcaacttctatattgtgtttatattatatatatggtacgt |
22790438 |
T |
|
| Q |
300 |
a--ttgcttgaatttggtgaggaataagaagaatacacacaagtctacaacctataactcttgattcagcacagttcaactcgaggtatttcatagtctg |
397 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22790439 |
atcttgcttgaatttggtgaggaataagaagaatacacacaagtctacaacctataactcttgattcagcacagttcaactcgaggtatttcatagtctg |
22790538 |
T |
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| Q |
398 |
cagttcatgcattacagtggaatattt |
424 |
Q |
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| T |
22790539 |
cagttcatgcattacagtggaatattt |
22790565 |
T |
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