View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9055_high_26 (Length: 258)
Name: NF9055_high_26
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9055_high_26 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 5 - 248
Target Start/End: Original strand, 33354006 - 33354249
Alignment:
| Q |
5 |
tgtttttgctatttctaaaatttaaaatcaatcatacctttgatatcatcgttgccattgactccttgccattcaatggtccagccaccacactgatatc |
104 |
Q |
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| T |
33354006 |
tgtttttgctatttctaaaatttaaaatcaatcatacctttgatatcatcgttgccattgactccttgccattcaatggtccagccaccacactgatatc |
33354105 |
T |
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| Q |
105 |
ctagattatttgcatggcttccggccacaagtatttttggaacctttttaggaagaggtaacaaaggcttctcagcagatttaccattttttagaaggac |
204 |
Q |
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| T |
33354106 |
ctagattatttgcatggcttccggccacaagtatttttggaacctttttaggaagaggtaacaaaggcttctcagcagatttaccattttttagaaggac |
33354205 |
T |
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| Q |
205 |
catggatttccttacagcttccctagccagttctctgtgctcct |
248 |
Q |
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| T |
33354206 |
catggatttccttacagcttccctagccagttctttgtgctcct |
33354249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 33346981 - 33347201
Alignment:
| Q |
20 |
taaaatttaaaatcaatcatacctttgatatcatcgttgccattgactccttgccattcaatggtccagccaccacactgatatcctagattatttgcat |
119 |
Q |
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| T |
33346981 |
taaaattaaaaactaatcataactttgatatcatcgttgccactgactccttgccattcaatggtccagccaccgcactgatgtcctagattatttgcat |
33347080 |
T |
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| Q |
120 |
ggcttccggccacaagtatttttggaacctttttaggaagaggtaacaaaggcttctcagcagatttaccattttttagaaggaccatggatttccttac |
219 |
Q |
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| T |
33347081 |
ggcttccggccacaagtatctttggaacctttttaggaagaggtaacaaaggcttctcaggagatttaccattttttagaaggaccatggatttcctcac |
33347180 |
T |
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| Q |
220 |
agcttccctagccagttctct |
240 |
Q |
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| T |
33347181 |
agcatccctagccagttctct |
33347201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 67 - 248
Target Start/End: Complemental strand, 9992006 - 9991825
Alignment:
| Q |
67 |
tccttgccattcaatggtccagccaccacactgatatcctagattatttgcatggcttccggccacaagtatttttggaacctttttaggaagaggtaac |
166 |
Q |
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| T |
9992006 |
tccttgccactgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaacgagtatttttggagcctttttaggaagaggaaga |
9991907 |
T |
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| Q |
167 |
aaaggcttctcagcagatttaccattttttagaaggaccatggatttccttacagcttccctagccagttctctgtgctcct |
248 |
Q |
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| T |
9991906 |
agcggcttatcagcattttcaccattctttaatagtaccaatgatttcctcacagcttccctagccaattccctatgctcct |
9991825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 67 - 248
Target Start/End: Complemental strand, 9999141 - 9998960
Alignment:
| Q |
67 |
tccttgccattcaatggtccagccaccacactgatatcctagattatttgcatggcttccggccacaagtatttttggaacctttttaggaagaggtaac |
166 |
Q |
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||||||||||| ||||||||| |||||||| |||||||||||||||| ||||| ||||| || ||||||||||| | | |||||||||||||||| | |
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| T |
9999141 |
tccttgccattgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaacaagtattttggaagcctttttaggaagaggaagt |
9999042 |
T |
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| Q |
167 |
aaaggcttctcagcagatttaccattttttagaaggaccatggatttccttacagcttccctagccagttctctgtgctcct |
248 |
Q |
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| T |
9999041 |
atcggcttatcaacattttcaccattctttaatagtaccaatgatttcctcaccgcttccctagccaattccctatgctcct |
9998960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 67 - 248
Target Start/End: Complemental strand, 10013395 - 10013214
Alignment:
| Q |
67 |
tccttgccattcaatggtccagccaccacactgatatcctagattatttgcatggcttccggccacaagtatttttggaacctttttaggaagaggtaac |
166 |
Q |
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|||||||||| ||||||||| |||||||| |||| ||||| ||||| ||||||||||| || ||||||||||||||| |||||||||||||||| | |
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| T |
10013395 |
tccttgccatgtaatggtccatccaccacattgatttcctatattatcagcatggcttccagcaacaagtatttttggagcctttttaggaagaggaagt |
10013296 |
T |
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| Q |
167 |
aaaggcttctcagcagatttaccattttttagaaggaccatggatttccttacagcttccctagccagttctctgtgctcct |
248 |
Q |
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| T |
10013295 |
atcggcttatcagaacttttaccgttcttcaatagtaccaatgatttcctaacagcttctctagccaattctctatgctcct |
10013214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 10004857 - 10004762
Alignment:
| Q |
67 |
tccttgccattcaatggtccagccaccacactgatatcctagattatttgcatggcttccggccacaagtatttttggaacctttttaggaagagg |
162 |
Q |
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||||||||||| ||||||||| |||||||| |||||||||||||||| ||||| ||||| || ||||||||||||| | ||||||||||||||| |
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| T |
10004857 |
tccttgccattgaatggtccatccaccacattgatatcctagattatcagcatgacttccagcaacaagtatttttgaagactttttaggaagagg |
10004762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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