View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9055_high_28 (Length: 232)
Name: NF9055_high_28
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9055_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 40147124 - 40146915
Alignment:
| Q |
1 |
agatgtgtaaaaagtgattggagggatgatattttgttggtaccaatctccatgttggctttcaatttcagttgagcgattttctcctttgtgaaatgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40147124 |
agatgtgtaaaaagtgattggagggatgatattttgttggtaccaatctccatgttggctttcaatttcagttgagcgattttctcctttgtgaaatgga |
40147025 |
T |
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| Q |
101 |
ataacctctctgatgaattgaatttttcgttatcatcagagtcattcttttgtgactctatagtaaaaggaaatcgtatgggatgttgaataccacttgg |
200 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40147024 |
ataacctctctgatggattgaacttttcgttatcatcagagtcattcttttgtggctctatagtaaaaggaaatcgtatgggatgttgaataccacttgg |
40146925 |
T |
|
| Q |
201 |
aaaccaacgt |
210 |
Q |
| |
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|||||||||| |
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| T |
40146924 |
aaaccaacgt |
40146915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 133
Target Start/End: Original strand, 8102824 - 8102953
Alignment:
| Q |
4 |
tgtgtaaaaagtgattggagggatgatattttgttggtaccaatctccatgttggctttcaatttcagttgagcgattttctcctttgtgaaatggaata |
103 |
Q |
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|||| |||||||| ||| ||||| ||||||||||| ||||| | || | ||||||||||||||||| ||||| ||||||||||||||||||||| |||| |
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| T |
8102824 |
tgtgcaaaaagtgcttgaagggaagatattttgttcgtacccgtttctaagttggctttcaatttcaattgagagattttctcctttgtgaaatgaaata |
8102923 |
T |
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| Q |
104 |
acctctctgatgaattgaatttttcgttat |
133 |
Q |
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| T |
8102924 |
acctaactgatgggttgagtttttcgttat |
8102953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 7655742 - 7655667
Alignment:
| Q |
134 |
catcagagtcattcttttgtgactctatagtaaaaggaaatcgtatgggatgttgaataccacttggaaaccaacg |
209 |
Q |
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| T |
7655742 |
catcagagtgattcttttgtggctctatagttaaaggaaatcgtataggtcgttgaattccatttggaaaccaacg |
7655667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 7606777 - 7606825
Alignment:
| Q |
161 |
tagtaaaaggaaatcgtatgggatgttgaataccacttggaaaccaacg |
209 |
Q |
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| T |
7606777 |
tagtgaaaggaaatcgtatgggaagttgaataccatttggaaaccaacg |
7606825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 7629167 - 7629211
Alignment:
| Q |
166 |
aaaggaaatcgtatgggatgttgaataccacttggaaaccaacgt |
210 |
Q |
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| T |
7629167 |
aaaggaaatcgtatgggaagttgaataccatttggaaaccaacgt |
7629211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 7615778 - 7615821
Alignment:
| Q |
166 |
aaaggaaatcgtatgggatgttgaataccacttggaaaccaacg |
209 |
Q |
| |
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||||||||||||||||| ||||||| |||| ||||||||||||| |
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| T |
7615778 |
aaaggaaatcgtatgggctgttgaacaccatttggaaaccaacg |
7615821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 39082796 - 39082834
Alignment:
| Q |
65 |
atttcagttgagcgattttctcctttgtgaaatggaata |
103 |
Q |
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||||||||| |||||||||||||||||||||||||||| |
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| T |
39082796 |
atttcagttccgcgattttctcctttgtgaaatggaata |
39082834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 104
Target Start/End: Original strand, 7629008 - 7629084
Alignment:
| Q |
28 |
gatattttgttggtaccaatctccatgttggctttcaatttcagttgagcgattttctcctttgtgaaatggaataa |
104 |
Q |
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||||||||| || |||||||||| ||||| ||| |||||||||| |||||||||||||||| || |||||||| |
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| T |
7629008 |
gatattttgatgttaccaatctctttgttgatttttgatttcagttgcacgattttctcctttgtaaagtggaataa |
7629084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 11969370 - 11969428
Alignment:
| Q |
79 |
attttctcctttgtgaaatggaataacctctctgatgaattgaatttttcgttatcatc |
137 |
Q |
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| T |
11969370 |
attttctgctttgtgaaatggaataacctctctggtggattgagtttttctttttcatc |
11969428 |
T |
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