View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9055_high_3 (Length: 609)
Name: NF9055_high_3
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9055_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 20 - 599
Target Start/End: Original strand, 45787220 - 45787803
Alignment:
| Q |
20 |
caagcaacatccctactagccggccaagtaaaaggagtcttgtaaccatgaggtggaggaaccctacacttcagatcctcttcccctttaaccggacagt |
119 |
Q |
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| T |
45787220 |
caagcaacatccctactagccggccaagtaaaaggagtcttgtaaccatgaggtggaggaaccctacacttcagatcctcttcccctttaaccggacagt |
45787319 |
T |
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| Q |
120 |
gtctttccctataaatcattctactccgcttatacctcaatgatctcgtcggatcctcacatggtgtgtattctgtgaaattcacgccacaacgagggaa |
219 |
Q |
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| T |
45787320 |
gtctttccctataaatcattctactccgcttatacctcaaagatctagtcggatcctcacatggtgtgtattctgtgaaattcacgccacaacgagggaa |
45787419 |
T |
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| Q |
220 |
gttaaaggtttcggatgaaagtgcgatgatggtatcggaggagttatggtgagattggaaatcgagggtgggcttattgac---ttggatggtgcatgat |
316 |
Q |
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| T |
45787420 |
gttaaaggtttcggatgaaagtgcgatgatggtatcggaggagttatggtgagattggaaatcgagggtgggtttattgacttgttggatggtgcatgat |
45787519 |
T |
|
| Q |
317 |
ggtgatgttacgatggcttttttcgtgagggaggtgaaagaagcacgttgttgataagcgcctaggagataaaaggcagcacagaggaaagcgatgagga |
416 |
Q |
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| T |
45787520 |
ggtgatgttatgatggcttttttcgtgagggaggtgaaagaagcacgttgttgataagcgcctaggagataaaaggcagcacagaggaaagcgatgagga |
45787619 |
T |
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| Q |
417 |
agtagaggtgaggttttctcattgatgaaggtctgggaaatttgttgttacgtgaataagatgatggatccatcgtattcagtagaaactatcaagactg |
516 |
Q |
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| T |
45787620 |
agtagaggtgaggttttctcattgatgaaggtctgggaaatttgttgttacgtgaataagatgatggatccatcgtattcagtagaaactatcaagactg |
45787719 |
T |
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| Q |
517 |
aagaaagtgattcttggaatttagaattggtttaggtttagggcttgatttaa-tttagatgtatatataattttcagtctctg |
599 |
Q |
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| T |
45787720 |
aagaaagtgattcttggaatttagaattggtttaggtttagggcttgatttaattttagatgtatatataattttcagtctctg |
45787803 |
T |
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