View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9055_high_31 (Length: 211)
Name: NF9055_high_31
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9055_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 15195735 - 15195916
Alignment:
| Q |
18 |
ccttttatgataaagacaccaaaaattaagatccgttctgatgaagaacaactcatcccaactgagagaatattccattttacaaaggagaataccgcga |
117 |
Q |
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| T |
15195735 |
ccttttatgataaatacaccacaaattaagatccgttttgatgaagaacaactcatcccaactgagagaatattccattttacaaaggagaatatcgcga |
15195834 |
T |
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| Q |
118 |
gactcaaattaaaagccaatatagaagctggcaccaacaaaatatcttccatgcaagcgctttgcacccacctttggcgctc |
199 |
Q |
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| T |
15195835 |
gactcaaattaaaagctaatatagaagctggcaccaacaaaatatcttccatgcaagcgctttgcacccacctttggcgctc |
15195916 |
T |
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Target: chr4 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 81 - 203
Target Start/End: Complemental strand, 8999417 - 8999290
Alignment:
| Q |
81 |
gagagaatattccattttacaaaggagaataccgcgagactcaaattaaaagccaatatagaagctggcac------caacaaaatatcttccatgcaag |
174 |
Q |
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|||||||||||||||||||| |||||||||| | ||||||||||||||||||| || ||||| || || || |||||||||||||||| |||||| |
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| T |
8999417 |
gagagaatattccattttactaaggagaatatcacgagactcaaattaaaagcgaacatagaggccggtactagtatcaacaaaatatcttccctgcaag |
8999318 |
T |
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| Q |
175 |
cgctttgcacccacctttggcgctctgtg |
203 |
Q |
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| T |
8999317 |
cgc-ttacactcacctttggcgctctgtg |
8999290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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