View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9055_low_1 (Length: 893)
Name: NF9055_low_1
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9055_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 777; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 777; E-Value: 0
Query Start/End: Original strand, 12 - 874
Target Start/End: Original strand, 16066900 - 16067763
Alignment:
| Q |
12 |
atggacatcaccaaaaatgtatggcaatcaacgcacaagtgcttcattattccctgctcttaattgaaagattatattcccacaaaaaggaatttaatta |
111 |
Q |
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| T |
16066900 |
atggccatgaccaaaaatgtatggcaatcaacgcacaagtgcttcattattccctgctcttaattgaaagattatattcccacaaaaaggaatttaatta |
16066999 |
T |
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| Q |
112 |
gcattgaggccaattgattgaaagaatgatgaatggagaccaagaaatttgatctatgcaaaagtggccgacccaaatgttgaaggaaagttaactacga |
211 |
Q |
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| T |
16067000 |
gcattgaggccaattgattgaaagaatgatgaatggagaccaagaaatttgatctatgcaaaagtggccgacccaaatgttgaaggaaagttaactacga |
16067099 |
T |
|
| Q |
212 |
aaaaagtgttgaaggaaaactaataataaatattcacaaaatggtttcttttataaaatagaatcaatagattgaacagagggttgccctttcaaaagga |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16067100 |
aaaaagtgttgaaggaaaactaataataaatattcacaaaatggtttcttttataaaatagaatcaatagattgaacagagggttgccctttcaaaagga |
16067199 |
T |
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| Q |
312 |
ataactatcaattcctctaaaggacagtgaatagtaagtcaaattaaaatatttgtgattgatgagggtaggca-cannnnnnnnncctagcaacttttc |
410 |
Q |
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| T |
16067200 |
ataactatcaattcctctaaagggtagtgaatagtaagtcaaatttaaatattggtgattgatgagggcaggcatcattttttttgcctagcaacttttc |
16067299 |
T |
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| Q |
411 |
tgcctataaaagggtagcaatgtataacatattatagcaaaatagagcaaacattggtataacttataatggataagttaatttatggtcaaagagtctt |
510 |
Q |
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| T |
16067300 |
tacctataaaagggtagcaatgtataacatattatagcaaaatagagcaaacattggtataacttataatggataagttaatttatggtcaaagagtctt |
16067399 |
T |
|
| Q |
511 |
tcatggagaggttgaaagtgagatgaagccaaggatgacttgccggtataatagtaatttgccacaaatctagatagctattagctatgtttggatgggc |
610 |
Q |
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| T |
16067400 |
tcatggagaggttgaaagtgagatgaagccaaggatgacttgccggtataatagtaatttgccacaaatctagatagctattagctatgtttggatgggc |
16067499 |
T |
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| Q |
611 |
ggtgagattaacaaaattacagcagcattatgattttgttgatgctttaaagtgtagtttttatcaaaattacagtggttcactgtaattatgagaatct |
710 |
Q |
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| T |
16067500 |
ggtgagattaacaaaattacagcagcattgtgattttgttgatgctttaaagtgtagtttttatcaaaattacagtggttcactgtaattatgagaatct |
16067599 |
T |
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| Q |
711 |
catcgtcaatctaaatatgcatttaattttatttccggcaggtcatccttcggctatatttggctttcttcctctcatgtaagactcttacgaccttctc |
810 |
Q |
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| T |
16067600 |
caccgtcaatctaaatatgcatttagtttcatttccggcaggtcatccttcggctatatttggctttcttcctctcatgtaagactcttacgaccttctc |
16067699 |
T |
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| Q |
811 |
atatgggctgatcaataaatactaacttttgcataatgtttttggagaaattaatatggcttga |
874 |
Q |
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| T |
16067700 |
atatgggctgatcaataaatactaacttttgcataatgttattggagaaattaatatggcttga |
16067763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 502 - 565
Target Start/End: Original strand, 16072544 - 16072607
Alignment:
| Q |
502 |
aagagtctttcatggagaggttgaaagtgagatgaagccaaggatgacttgccggtataatagt |
565 |
Q |
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| T |
16072544 |
aagagtctttcatggagaggttgaaagtgaaatggagccaaggatgacttgccggtatattagt |
16072607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 745 - 815
Target Start/End: Original strand, 16072647 - 16072717
Alignment:
| Q |
745 |
ccggcaggtcatccttcggctatatttggctttcttcctctcatgtaagactcttacgaccttctcatatg |
815 |
Q |
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| T |
16072647 |
ccggcaggtcatccttcggctatatttggctttcttcctttcatgtgagactctcgagaccttatcatatg |
16072717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 640 - 721
Target Start/End: Original strand, 7873090 - 7873171
Alignment:
| Q |
640 |
atgattttgttgatgctttaaagtgtagtttttatcaaaattacagtggttcactgtaattatgagaatctcatcgtcaatc |
721 |
Q |
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| T |
7873090 |
atgattttgttgaagctataaaatgtaacttttgtcaaaattacagtggttcaccgtgattatgttaaactcaccgtcaatc |
7873171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 643 - 692
Target Start/End: Complemental strand, 36862202 - 36862153
Alignment:
| Q |
643 |
attttgttgatgctttaaagtgtagtttttatcaaaattacagtggttca |
692 |
Q |
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||||||| || ||| |||||||||| |||||||||||| ||||||||||| |
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| T |
36862202 |
attttgtcgaagctctaaagtgtagcttttatcaaaatcacagtggttca |
36862153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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