View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9055_low_10 (Length: 543)
Name: NF9055_low_10
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9055_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 23 - 524
Target Start/End: Original strand, 39775918 - 39776415
Alignment:
| Q |
23 |
tggggatcattgatgtcgacggggctccaatcaatgaatgttaaagcttgattcgtggcagataaggccaacagaacaatgagaataaaaacaggggatt |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39775918 |
tggggatcattgatgtcgacggggctccaatcaatgaatgttaaagcttgattcgtagcagataagaccaacagaacaatgagaataaaaacaggggatt |
39776017 |
T |
|
| Q |
123 |
gaagtgtcatgatgcttctattgtaactgctatattttcaagtttcacaattcgtggttgtgtgattaagccttggtttggttgttatatatattgcaca |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39776018 |
gaagtgtcatgatgcttctattgtaactgctatattttcaattttcacaattcgtggttgtgtgattaagccttggtttggttgttatatatattacaca |
39776117 |
T |
|
| Q |
223 |
caagtgatattaagttcgtaataannnnnnnnnnnnnnaggggaaataaatataattaagtcaagtctaattaaatctcctaacaaaaagtcaaatccta |
322 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||| |
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| T |
39776118 |
caagtgatattaagttcgtaataa----ttatttttttaggggaaataaatataataaagtcaaatccaattaaatctcctaacaaaaagtcaaatccta |
39776213 |
T |
|
| Q |
323 |
tcaagtcaaatctaattaagtcaaatatttttgtttgacttgtaatcaagtcaaatatannnnnnnagagtaattaagtcaaagatatattagatgctcg |
422 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
39776214 |
tcaaatcaaatctaattaagtcaaatatttttgtttgacttgtaattaagtcaaatatatttttttagagtaattaagtcaaagatatattagatcctcg |
39776313 |
T |
|
| Q |
423 |
tagnnnnnnntcaaatattannnnnnngaaggaagaaaaaagcatcaaagagaaacgacgaatagtgtgggcaagttatttcaccacactaacctgcgtg |
522 |
Q |
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| T |
39776314 |
tagaaaaaaatcaaatattatttttttgaaggaagaaaaaagcatcaaagagaaacgaagaatagtgtgggcaagttatttcaccacactaacctgcgtg |
39776413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 23 - 323
Target Start/End: Original strand, 39783388 - 39783690
Alignment:
| Q |
23 |
tggggatcattgatgtcgacggggctccaatcaatgaatgttaaagcttgattcgtggcagataaggccaacagaacaatgagaataaaaacaggggatt |
122 |
Q |
| |
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||||||||||||||||||||||||| |||||| | |||||| ||||||||| || |||||||||||||||||||||||||||||||||| |||||| |
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| T |
39783388 |
tggggatcattgatgtcgacggggccccaatcgcttgatgttatagcttgatttatgatagataaggccaacagaacaatgagaataaaaacaagggatt |
39783487 |
T |
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| Q |
123 |
gaagtgtcatgatgcttctattgtaactgctatattttcaagtttcacaattcgtggttgtgtgattaagccttg----gtttggttgt--tatatatat |
216 |
Q |
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||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||| ||||||||| |||||||||| ||||||||| |
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| T |
39783488 |
gaagtttcatgatgcttctattgtaattgctatattttcaagtttcacaattcgtgttggtgtgagtaagccttggtcagtttggttgttatatatatat |
39783587 |
T |
|
| Q |
217 |
tgcacacaagtgatattaagttcgtaataannnnnnnnnnnnnnaggggaaataaatataattaagtcaagtctaattaaatctcctaacaaaaagtcaa |
316 |
Q |
| |
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||||||||||||||||||||||||||||| || |||||||||||||||||||||| || ||||||||||||||||||||| |||| |
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| T |
39783588 |
tgcacacaagtgatattaagttcgtaata----tttatttttctagtggaaataaatataattaagtcacatccaattaaatctcctaacaaaaaatcaa |
39783683 |
T |
|
| Q |
317 |
atcctat |
323 |
Q |
| |
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||||||| |
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|
| T |
39783684 |
atcctat |
39783690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 67 - 187
Target Start/End: Original strand, 39817832 - 39817952
Alignment:
| Q |
67 |
agcttgattcgtggcagataaggccaacagaacaatgagaataaaaacaggggattgaagtgtcatgatgcttctattgtaactgctatattttcaagtt |
166 |
Q |
| |
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|||||||||||||||| || |||| || |||||| |||||||| |||| ||||||||| | ||||||||||| |||||||| || ||| ||||||| | |
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| T |
39817832 |
agcttgattcgtggcaaatgaggcaaaaagaacagcgagaataagaacaagggattgaaatctcatgatgcttgtattgtaattgttatcttttcaaact |
39817931 |
T |
|
| Q |
167 |
tcacaattcgtggttgtgtga |
187 |
Q |
| |
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|||||| | ||||| |||||| |
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| T |
39817932 |
tcacaaattgtggtggtgtga |
39817952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 95 - 244
Target Start/End: Original strand, 34657279 - 34657432
Alignment:
| Q |
95 |
agaacaatgagaataaaaacaggggattgaagtgtcatgatgcttctattgtaactgctatattttcaagtttcacaattcgtggttgtgtgattaagcc |
194 |
Q |
| |
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||||||||||| ||||||||| ||||||||| | ||||||| ||| |||||||| || ||| |||||||| ||||||| | || | ||||| |||||| |
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| T |
34657279 |
agaacaatgaggataaaaacaagggattgaaatctcatgatccttgtattgtaattgttatcttttcaagcttcacaaattttgttgttgtgagtaagcc |
34657378 |
T |
|
| Q |
195 |
----ttggtttggttgttatatatattgcacacaagtgatattaagttcgtaat |
244 |
Q |
| |
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|||||| ||||||||||| ||| |||||||| | |||| ||||||||||| |
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| T |
34657379 |
ttagttggttaggttgttatatttatagcacacaaattatatcaagttcgtaat |
34657432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 85 - 172
Target Start/End: Complemental strand, 10578423 - 10578338
Alignment:
| Q |
85 |
taaggccaacagaacaatgagaataaaaacaggggattgaagtgtcatgatgcttctattgtaactgctatattttcaagtttcacaa |
172 |
Q |
| |
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|||||| || |||||||||||||||| || | | ||||||| | |||||||||| |||||||| || ||| |||||||| ||||||| |
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| T |
10578423 |
taaggcaaatagaacaatgagaataagaataagagattgaaatctcatgatgct--tattgtaattgttatcttttcaagattcacaa |
10578338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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