View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9055_low_13 (Length: 516)
Name: NF9055_low_13
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9055_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 26461308 - 26460964
Alignment:
| Q |
1 |
tgctaatatacccattttcattagtgcacagtttaatattttgttgaggttgtgaaagagagggagaaatggggaattgtcaaacaatagatgctgcagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26461308 |
tgctaatatacccattttcattagtgcacagtttcatattttgttgaggttgtgaaagagagtgagaaatggggaattgtcaaacaatagatgctgcagc |
26461209 |
T |
|
| Q |
101 |
actagtgatccaacaccctagtgggaagattgagagattgtattggtcagtgagtgcaagttatgtcatgagagccaatcctggttattatgtgtcactc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26461208 |
actagtgatccaacaccctagtgggaagattgagagattgtattggtcagtgagtgcaagttatgtcatgagagcaaatcctggttattatgtgtcactc |
26461109 |
T |
|
| Q |
201 |
atcatgccattgcctcaagaacaagaaggagagaatagtagtaataatgaggtgaagaagcctgtgcttttcactcgtgttaagttgcttaagcctgatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26461108 |
atcatgccattgcctcaagaacaagaaggagagaat---agtaataatgaggtgaagaagcctgtgcttttcactcgtgttaagttgcttaagcctgatg |
26461012 |
T |
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| Q |
301 |
acactctcactttaggacatgcttataggctcatcacaactcaaggta |
348 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26461011 |
acactctcactttaggacatgcttataggctcatcacaactcaaggta |
26460964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 428 - 504
Target Start/End: Complemental strand, 26460887 - 26460811
Alignment:
| Q |
428 |
gtctgcgtttctgaaaatttgttgcgtgttttggttggaagaggttgagaaggtaatgaaagcaaagaagaggaagg |
504 |
Q |
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| T |
26460887 |
gtctgcgtttctgaaaatttgttgtgtgttttggttggaagaggttgagaaggtaatgaaagcaaagaagaggaagg |
26460811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 273 - 348
Target Start/End: Complemental strand, 15406954 - 15406879
Alignment:
| Q |
273 |
actcgtgttaagttgcttaagcctgatgacactctcactttaggacatgcttataggctcatcacaactcaaggta |
348 |
Q |
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||||||||||||||||||| |||| |||| ||||| | | | || |||||||||||||||||||| | |||||||| |
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| T |
15406954 |
actcgtgttaagttgcttaggcctaatgaaactcttaatcttggtcatgcttataggctcatcactaatcaaggta |
15406879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 216
Target Start/End: Complemental strand, 15407146 - 15406999
Alignment:
| Q |
69 |
atggggaattgtcaaacaatagatgctgcagcactagtgatccaacaccctagtgggaagattgagagattgtattggtcagtgagtgcaagttatgtca |
168 |
Q |
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| T |
15407146 |
atgggaaattgtcaagctgttgatgctgcagttcttgtgatccaacatccatgtgggaagatagatagattgtattggccagtaactgctagtgaagtta |
15407047 |
T |
|
| Q |
169 |
tgagagccaatcctggttattatgtgtcactcatcatgccattgcctc |
216 |
Q |
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| T |
15407046 |
tgaaaaccaatcctggtcactatgtttcattgattatgccattacctc |
15406999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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