View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9055_low_15 (Length: 505)
Name: NF9055_low_15
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9055_low_15 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 17 - 495
Target Start/End: Original strand, 45283223 - 45283701
Alignment:
| Q |
17 |
cttctcaccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
45283223 |
cttctcaccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaattcctcatatcagcgatttggtcatga |
45283322 |
T |
|
| Q |
117 |
acagcttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttgg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283323 |
acagcttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttgg |
45283422 |
T |
|
| Q |
217 |
caccattttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatgtatgc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283423 |
caccattttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatgtatgc |
45283522 |
T |
|
| Q |
317 |
cttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattctaagatttctttgt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
45283523 |
cttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgagttttggcacataattctaagatttctttgt |
45283622 |
T |
|
| Q |
417 |
tgagtttgaacctgggggtcttcaccatttttgcgaacagcgacaacaacaccgatggcaacacctacaacgagaataa |
495 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283623 |
tgagtttgaacctcggggtcttcaccatttttgcgaacggcgacaacaacaccgatggcaacacctacaacgagaataa |
45283701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 17 - 495
Target Start/End: Original strand, 45271449 - 45271927
Alignment:
| Q |
17 |
cttctcaccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
45271449 |
cttctcaccatcatttgcatcgtcaaatccttccatacaaccttgtttgtaagagataactgcactcaaccaattcctcatatcagcagtttggtcatga |
45271548 |
T |
|
| Q |
117 |
acagcttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttgg |
216 |
Q |
| |
|
||||||| ||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
45271549 |
acagcttcaatgttgttgtcacgaacacagttgttggagaggtcaagactgtccaaagcgaattgcatcaagtctttgcagtcatcaagagccatcttgg |
45271648 |
T |
|
| Q |
217 |
caccattttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatgtatgc |
316 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
45271649 |
caccatttttctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcagtggctgccttcacggctgctgctatgtatgc |
45271748 |
T |
|
| Q |
317 |
cttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattctaagatttctttgt |
416 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45271749 |
cttagggtcagcggcatcggcgccacgcacagagctaagagtgtcatgacagagtttctggtcttgtgcgttttggcacataattctaagatttctttgt |
45271848 |
T |
|
| Q |
417 |
tgagtttgaacctgggggtcttcaccatttttgcgaacagcgacaacaacaccgatggcaacacctacaacgagaataa |
495 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45271849 |
tgagtttgaaccttagggtcttcaccatttttgcgaatgtcgacaacaacaccgatgataacacctacaacgagaataa |
45271927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 495
Target Start/End: Original strand, 45274982 - 45275460
Alignment:
| Q |
17 |
cttctcaccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| || || || |||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
45274982 |
cttctcaccatcatttgcatcgtcaaatccttccatacaggcttgtctgtaggatatgactgcactcaaccaattcctcatatcagcagtttggtcatga |
45275081 |
T |
|
| Q |
117 |
acagcttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttgg |
216 |
Q |
| |
|
||||||||||||||||||||| || ||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45275082 |
acagcttgaatgttgttgtcactaagacaattgtttgagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcatcaagagccatcttgg |
45275181 |
T |
|
| Q |
217 |
caccattttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatgtatgc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
45275182 |
caccattttcctttccatactcagtggtgagcctttcactcatgttaaaggcgttcatgacattgtcagtggctgccttcacggcggctgctatgtatgc |
45275281 |
T |
|
| Q |
317 |
cttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattctaagatttctttgt |
416 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45275282 |
cttagggtcagcggcatcggcgccatgcacagagctaagagtttcatggcagagtttctggtcttgtgcgttttggcacataattctaagatttctttgt |
45275381 |
T |
|
| Q |
417 |
tgagtttgaacctgggggtcttcaccatttttgcgaacagcgacaacaacaccgatggcaacacctacaacgagaataa |
495 |
Q |
| |
|
||||||||||||| ||||||| |||||||||| ||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45275382 |
tgagtttgaacctcagggtctttaccatttttgtgaatgtcgacaacaacaccgatgataacacctacaacgagaataa |
45275460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 495
Target Start/End: Original strand, 45294611 - 45295089
Alignment:
| Q |
17 |
cttctcaccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatga |
116 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45294611 |
cttctcaccgtcattttcatcgtcaaatccttccatacaagcttgtctgtaagagataactgcactcaaccaattcctcatatcagcggtttggtcatga |
45294710 |
T |
|
| Q |
117 |
acagcttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttgg |
216 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45294711 |
acagcttgaatgttgctgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttgg |
45294810 |
T |
|
| Q |
217 |
caccattttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatgtatgc |
316 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || | ||||||||||||||| |
|
|
| T |
45294811 |
taccatcttcctttccatactcagtggtgagcctgtcactcatgttaaaggccttaatgacattgtcagtggctgcctttacagcggctgctatgtatgc |
45294910 |
T |
|
| Q |
317 |
cttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattctaagatttctttgt |
416 |
Q |
| |
|
||| ||||||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||| | ||| ||||||||||||| | |||| ||||||| |
|
|
| T |
45294911 |
cttagggtcagcggcgtcggcgccacgcacagagctaagtgtttcatggcagagtttttggtcatctgcattttggcacataacttgaagagatctttgt |
45295010 |
T |
|
| Q |
417 |
tgagtttgaacctgggggtcttcaccatttttgcgaacagcgacaacaacaccgatggcaacacctacaacgagaataa |
495 |
Q |
| |
|
||||||| ||||| |||||||||||||||||| |||||||| ||| || ||||||||||||||||||||||| |||| |
|
|
| T |
45295011 |
tgagttttaacctcagggtcttcaccatttttgtgaacagcgcaaaccacgccgatggcaacacctacaacgaggataa |
45295089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 495
Target Start/End: Original strand, 45303571 - 45304049
Alignment:
| Q |
17 |
cttctcaccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatga |
116 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45303571 |
cttctcaccgtcattttcatcgtcaaatccttccatacaagcttgtctgtaagagataactgcactcaaccaattcctcatatcagcggtttggtcatga |
45303670 |
T |
|
| Q |
117 |
acagcttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttgg |
216 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45303671 |
acagcttgaatgttgctgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttgg |
45303770 |
T |
|
| Q |
217 |
caccattttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatgtatgc |
316 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || | ||||||||||||||| |
|
|
| T |
45303771 |
taccatcttcctttccatactcagtggtgagcctgtcactcatgttaaaggccttaatgacattgtcagtggctgcctttacagcggctgctatgtatgc |
45303870 |
T |
|
| Q |
317 |
cttcgggtcagcggcatcggcgccatgcacagagctaagagtttcatgacagagtttttggtcttgtgcgttttggcacataattctaagatttctttgt |
416 |
Q |
| |
|
||| ||||||||||| ||||||||| ||||||||||||| |||||||| |||||||||||||| | ||| ||||||||||||| | |||| ||||||| |
|
|
| T |
45303871 |
cttagggtcagcggcgtcggcgccacgcacagagctaagtgtttcatggcagagtttttggtcatctgcattttggcacataacttgaagagatctttgt |
45303970 |
T |
|
| Q |
417 |
tgagtttgaacctgggggtcttcaccatttttgcgaacagcgacaacaacaccgatggcaacacctacaacgagaataa |
495 |
Q |
| |
|
||||||| ||||| |||||||||||||||||| |||||||| ||| || ||||||||||||||||||||||| |||| |
|
|
| T |
45303971 |
tgagttttaacctcagggtcttcaccatttttgtgaacagcgcaaaccacgccgatggcaacacctacaacgaggataa |
45304049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 133
Target Start/End: Original strand, 38588624 - 38588718
Alignment:
| Q |
39 |
tcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaacagcttgaatgttgtt |
133 |
Q |
| |
|
|||||||| ||||| || | |||| ||| |||||||| |||||||||||||| || | ||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
38588624 |
tcaaatccgtccatgcatgattgttggtatgagataacagcactcaaccaattcctaaaatcaggtgtttgatcatgaatggcttgaatgttgtt |
38588718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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