View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9055_low_16 (Length: 487)
Name: NF9055_low_16
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9055_low_16 |
 | |
|
| [»] scaffold1207 (2 HSPs) |
| | |
|
| [»] scaffold0734 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 457; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 15 - 475
Target Start/End: Original strand, 11196902 - 11197362
Alignment:
| Q |
15 |
accaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11196902 |
accaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgatt |
11197001 |
T |
|
| Q |
115 |
attcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11197002 |
attcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttca |
11197101 |
T |
|
| Q |
215 |
ctgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctcgtcattatagtt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11197102 |
ctgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctcgtcattatagtt |
11197201 |
T |
|
| Q |
315 |
aacaacaatcatgggtttgtcattgaggtcgccaattactttgaagggccacgacttcatatcactttgtatgattgagtcgcaaaacttcctaccaatt |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11197202 |
aacaacaatcatgggtttgtcattgaggtcgccaattactttgaagggccacgacttcatatcactttgtacgattgagtcgcaaaacttcctaccaatt |
11197301 |
T |
|
| Q |
415 |
agcctctttgcatctacaaaacaaacaaaagaattgagtacactatgagaaaaaatgatgt |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11197302 |
agcctctttgcatctacaaaacaaacaaaagaattgagtacactatgagaaaaaatgatgt |
11197362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 15 - 475
Target Start/End: Original strand, 11156449 - 11156909
Alignment:
| Q |
15 |
accaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgatt |
114 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11156449 |
accacctcctaaatcaaaaatgaaaacatgtttacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgatt |
11156548 |
T |
|
| Q |
115 |
attcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttca |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11156549 |
attcgcataacattgaggccagcaataacacccgcatcttgggtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttca |
11156648 |
T |
|
| Q |
215 |
ctgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctcgtcattatagtt |
314 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11156649 |
ctgttgatccaaggtaaacttcagctatctcggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctcgtctttatagtt |
11156748 |
T |
|
| Q |
315 |
aacaacaatcatgggtttgtcattgaggtcgccaattactttgaagggccacgacttcatatcactttgtatgattgagtcgcaaaacttcctaccaatt |
414 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11156749 |
aacaacaatcatgggtttgtcattgaggttgccaattactttgaagggccacgacttcatatcactttgtacgattgagtcgcaaaacttcctaccaatt |
11156848 |
T |
|
| Q |
415 |
agcctctttgcatctacaaaacaaacaaaagaattgagtacactatgagaaaaaatgatgt |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11156849 |
agcctctttgcatctacaaaacaaacaaaagagttgagtacactatgagaaaaaatgatgt |
11156909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 15 - 439
Target Start/End: Complemental strand, 11241435 - 11241005
Alignment:
| Q |
15 |
accaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgatt |
114 |
Q |
| |
|
||||||||||||||| ||||| | ||||||||||||||||||||||| || |||||||| ||| ||||||||||||||| |||||| ||||||| ||||| |
|
|
| T |
11241435 |
accaccacctaaatcgaaaattagaacatgtctacatccatgattaagagttttcatgttaaggccatatgcaattgcaactgcagtaggctcagtgatt |
11241336 |
T |
|
| Q |
115 |
attcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttca |
214 |
Q |
| |
|
|||| || ||| ||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11241335 |
attcacaaaactttgaggccagcaatagcacccgcatctcgaatagactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttca |
11241236 |
T |
|
| Q |
215 |
ctgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctcgtcattatagtt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11241235 |
ctgttgatccaaggtaagcttcagctatcttggccatttttgccaataccatcgatgagatttcttcagcagcgaaatgcttttcctcgtcattatagtt |
11241136 |
T |
|
| Q |
315 |
aacaacaatcatgggtttgtcattgaggtcgccaattactttgaagggccacgacttcatatcactttgtatgattgagtcgca------aaacttccta |
408 |
Q |
| |
|
||||| | ||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| | ||| || |||||||||| |
|
|
| T |
11241135 |
aacaatagtcatgtgtttgtcattcaggtcgccaattactttgaagggccacaacttcatatcactttgtatgatggggtcacaaaacttaaacttccta |
11241036 |
T |
|
| Q |
409 |
ccaattagcctctttgcatctacaaaacaaa |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
11241035 |
ccaattagcctctttgcatctacaaaacaaa |
11241005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 15 - 468
Target Start/End: Original strand, 11209571 - 11210022
Alignment:
| Q |
15 |
accaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgatt |
114 |
Q |
| |
|
|||||||||||| ||||| |||||||||| ||||| |||||||||||| ||||||||| ||| |||||||||||||||||||||| ||||||||||| | |
|
|
| T |
11209571 |
accaccacctaagtcaaatatgaaaacatttctacgtccatgattaaatggtttcatgccaaagccatatgcaattgcagctgcagtaggctcattgagt |
11209670 |
T |
|
| Q |
115 |
attcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttca |
214 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| | || |
|
|
| T |
11209671 |
attcgcaaaacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcatcca |
11209770 |
T |
|
| Q |
215 |
ctgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctcgtcattatagtt |
314 |
Q |
| |
|
|||||||||||||| | ||||| ||| |||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11209771 |
ctgttgatccaaggaaggcttctgctgtctctcgcattttcgccaataccatggatgagatttcttcagcagcaaaatgcttttcctcgtctttatagtt |
11209870 |
T |
|
| Q |
315 |
aacaacaatcatgggtttgtcattgaggtcgccaattactttgaagggccacgacttcatatcactttgtatgattgagtcgcaaaacttcctaccaatt |
414 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||| |||||||| || || | ||||||||| |||| ||||||| |
|
|
| T |
11209871 |
aacaacaatcatgggtttgtcatttaggtcgccaattactttgaatggccacaacttcacatcactttctactatggggtcgcaaaatttccgaccaatt |
11209970 |
T |
|
| Q |
415 |
agcctctttgcatctacaaaacaaacaaaagaattgagtacactatgagaaaaa |
468 |
Q |
| |
|
|||||||||||||||||||||||| || ||| ||| ||||||| ||||||||| |
|
|
| T |
11209971 |
agcctctttgcatctacaaaacaa--aagagagttgtgtacactttgagaaaaa |
11210022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 15 - 439
Target Start/End: Original strand, 11170749 - 11171173
Alignment:
| Q |
15 |
accaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgatt |
114 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||||||| ||||||| |||||| |||||||||||||||||||||| ||||||||||| | |
|
|
| T |
11170749 |
accaccacctaagtcaaaaatgaaaacatttctacatccatgattaaatggtttcaagtcaaggccatatgcaattgcagctgcagtaggctcattgagt |
11170848 |
T |
|
| Q |
115 |
attcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttca |
214 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
11170849 |
attcgcaaaacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcctcca |
11170948 |
T |
|
| Q |
215 |
ctgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctcgtcattatagtt |
314 |
Q |
| |
|
|| ||||||||||| | | ||| ||||||||| |||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11170949 |
ctattgatccaaggaaggtttctgctatctcgcgcattttcaccaataccatggatgagatttcttcagcagcaaaatgtttttcctcgtcattatagtt |
11171048 |
T |
|
| Q |
315 |
aacaacaatcatgggtttgtcattgaggtcgccaattactttgaagggccacgacttcatatcactttgtatgattgagtcgcaaaacttcctaccaatt |
414 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||| |||||| |||||| ||||||||||| || | || | ||| |||| ||||||| |
|
|
| T |
11171049 |
aacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaatt |
11171148 |
T |
|
| Q |
415 |
agcctctttgcatctacaaaacaaa |
439 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
11171149 |
agcctctttgcatctacaaaacaaa |
11171173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 15 - 439
Target Start/End: Original strand, 11276133 - 11276557
Alignment:
| Q |
15 |
accaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgatt |
114 |
Q |
| |
|
|||||||||||| ||||| |||||||||| |||||||||||||||||| |||||| ||| || |||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
11276133 |
accaccacctaagtcaaatatgaaaacatttctacatccatgattaaatggtttcgtgttaaagccatatgcaattgcagctgcagtaggctcatttatt |
11276232 |
T |
|
| Q |
115 |
attcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttca |
214 |
Q |
| |
|
||||||||||| || |||||||||||| |||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
11276233 |
attcgcataacgtttaggccagcaatagcacccgcatctcgagtagactggcgctgtgagtcattaaagtatgcaggcacagttataacaacatcctcca |
11276332 |
T |
|
| Q |
215 |
ctgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctcgtcattatagtt |
314 |
Q |
| |
|
||||| |||||||| | ||||| ||||||||| |||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11276333 |
ctgttaatccaaggaaggcttctgctatctcgcgcattttcgccaataccatggatgagatttcttcagcagtaaaatgcttttcctcgtcattatagtt |
11276432 |
T |
|
| Q |
315 |
aacaacaatcatgggtttgtcattgaggtcgccaattactttgaagggccacgacttcatatcactttgtatgattgagtcgcaaaacttcctaccaatt |
414 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||| |||||| |||||| ||||||||||| || | || | ||| |||| ||||||| |
|
|
| T |
11276433 |
aacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcactaaatttccgaccaatt |
11276532 |
T |
|
| Q |
415 |
agcctctttgcatctacaaaacaaa |
439 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
11276533 |
agcctctttgcatctacaaaacaaa |
11276557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 341
Target Start/End: Original strand, 11200067 - 11200397
Alignment:
| Q |
15 |
accaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgatt |
114 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11200067 |
accaccacctaaataaaaaatgaaaacatttctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgatt |
11200166 |
T |
|
| Q |
115 |
attcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgt----tgtgagtcattaaagtaagcaggcacagttataacaacatcc |
210 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||| ||| ||||||||| ||||| ||||||||||| | ||||||| |||||||||||||| |
|
|
| T |
11200167 |
attcgcaaaacattgaggccagcaatagcacccgcatctcaagtagactggcgtacgttgtgaatcattaaagtatgtaggcacaattataacaacatcc |
11200266 |
T |
|
| Q |
211 |
ttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctcgtcattat |
310 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11200267 |
ttcactgttgatccaaggtaagcttcagcaatctcgcccatttttgtcaataccatggatgagatttcttctgcagcaaaatgcttttcctcgtcattat |
11200366 |
T |
|
| Q |
311 |
agttaacaacaatcatgggtttgtcattgag |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
11200367 |
agttaacaacaatcatgggtttgtcattgag |
11200397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 341
Target Start/End: Original strand, 11161316 - 11161654
Alignment:
| Q |
15 |
accaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggct-------- |
106 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
11161316 |
accaccacctaaataaaaaatgaaaacatgtatacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcatctgcagtaggctagtagagt |
11161415 |
T |
|
| Q |
107 |
cattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgt----tgtgagtcattaaagtaagcaggcacagttataa |
202 |
Q |
| |
|
||||||||| |||||||||||| |||||| ||||| |||||||||||||||| ||||||||| ||||| |||||||||| | ||||||| |||||| |
|
|
| T |
11161416 |
cattgattactcgcataacattaaggccaacaatagcacccgcatctcgagtagactggcgtacgttgtgaaacattaaagtatgtaggcacaattataa |
11161515 |
T |
|
| Q |
203 |
caacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctc |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
11161516 |
caacatccttcactgttgatccaaggtaagcttcagcaatctcgcccatttttgtcaataccatggatgagatttcttctgcagcaaaatgcttttcctc |
11161615 |
T |
|
| Q |
303 |
gtcattatagttaacaacaatcatgggtttgtcattgag |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11161616 |
gtcattatagttaacaacaatcatgggtttgtcattgag |
11161654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 15 - 435
Target Start/End: Original strand, 11133173 - 11133593
Alignment:
| Q |
15 |
accaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgatt |
114 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| || |||||||||| |||||| |||||||||||||||||||||||||||| | |||||| |||||| |
|
|
| T |
11133173 |
accacctcctaaatcaaaaacaaaaacatgtttatggtcatgattaaacggtttcttgtcaagaccatatgcaattgcagctgctgtaggctcgttgatt |
11133272 |
T |
|
| Q |
115 |
attcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttca |
214 |
Q |
| |
|
||||||||||| ||||| || ||||||||||| ||||||| ||| | |||||||| |||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
11133273 |
attcgcataacgttgagacctgcaataacacctgcatctctagtagcttggcgttgcgagtcattaaagtaagcaggaacagttataacgacatccttca |
11133372 |
T |
|
| Q |
215 |
ctgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctcgtcattatagtt |
314 |
Q |
| |
|
||||||||||||||||| |||| || ||||| ||||||| ||||||||| ||||| ||||| |||||||||||||| |||||||| |||| || || |
|
|
| T |
11133373 |
ctgttgatccaaggtaaacttctgcaatctcacgaatttttgtcaataccattgatgatatttcctcagcagcaaaatgtttttcctctccattgtaatt |
11133472 |
T |
|
| Q |
315 |
aacaacaatcatgggtttgtcattgaggtcgccaattactttgaagggccacgacttcatatcactttgtatgattgagtcgcaaaacttcctaccaatt |
414 |
Q |
| |
|
|||||||| ||||||||||||| | | | ||||||||||| || |||||| | ||||||||||| || | || | ||| | ||| | |||||||| |
|
|
| T |
11133473 |
gacaacaatattgggtttgtcatttatgccaccaattactttaaatggccacaatttcatatcactctgaactatagggtcactaaattctctaccaatg |
11133572 |
T |
|
| Q |
415 |
agcctctttgcatctacaaaa |
435 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
11133573 |
agcctcttcgcatctacaaaa |
11133593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1207 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: scaffold1207
Description:
Target: scaffold1207; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 332
Target Start/End: Original strand, 1067 - 1381
Alignment:
| Q |
15 |
accaccacctaaatcaaaaatgaaaacatgtctacatccatgattaaaaggtttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgatt |
114 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||| |||||| | ||||| |||||| |||||||||||||||||||||| ||||||||||| | |
|
|
| T |
1067 |
accaccacctaagtcaaaaatgaaaacatttctatgtccatgtg---atggttttgtgtcaaagccatatgcaattgcagctgcagtaggctcattgagt |
1163 |
T |
|
| Q |
115 |
attcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtgagtcattaaagtaagcaggcacagttataacaacatccttca |
214 |
Q |
| |
|
|||| || ||||||||||||||||||| |||| ||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| || |
|
|
| T |
1164 |
attcccaaaacattgaggccagcaatagcacctgcatctcgagtagattggcgttgtgagtcattaaagtatgcaggcacagttataacaacatcctcca |
1263 |
T |
|
| Q |
215 |
ctgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgagatttcttcagcagcaaaatgcttttcctcgtcattatagtt |
314 |
Q |
| |
|
|||||||||||||| | ||||| ||| ||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1264 |
ctgttgatccaaggaaggcttctgctgtctcgcgcattttcgccaataccatggatgagatttcttcagcagcaaaatgcttttcctcgtcattatagtt |
1363 |
T |
|
| Q |
315 |
aacaacaatcatgggttt |
332 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
1364 |
aacaacaatcatgggttt |
1381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1207; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 356 - 468
Target Start/End: Original strand, 1387 - 1497
Alignment:
| Q |
356 |
tgaagggccacgacttcatatcactttgtatgattgagtcgcaaaacttcctaccaattagcctctttgcatctacaaaacaaacaaaagaattgagtac |
455 |
Q |
| |
|
|||| |||||| |||||| |||||||| || || | |||||||| |||| ||||||||||||||||||||||||||||||| || ||| ||| |||| |
|
|
| T |
1387 |
tgaatggccacaacttcacatcactttctactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaa--aagagagttgtgtac |
1484 |
T |
|
| Q |
456 |
actatgagaaaaa |
468 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
1485 |
actatgaaaaaaa |
1497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0734 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0734
Description:
Target: scaffold0734; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 458
Target Start/End: Original strand, 6715 - 6770
Alignment:
| Q |
403 |
ttcctaccaattagcctctttgcatctacaaaacaaacaaaagaattgagtacact |
458 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||| ||| ||||||| |
|
|
| T |
6715 |
ttccaaccaattagcctctttgcatctacaaaacaaacagaagagttgtgtacact |
6770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 79 - 142
Target Start/End: Complemental strand, 29577594 - 29577531
Alignment:
| Q |
79 |
ccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataa |
142 |
Q |
| |
|
|||||||||| |||||| |||| || ||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
29577594 |
ccatatgcaagtgcagcagcagttggttcattgattatccgcattacattgaggccagcaataa |
29577531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 66 - 197
Target Start/End: Original strand, 39985876 - 39986007
Alignment:
| Q |
66 |
tttcatgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactgg |
165 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||| |||| ||||||||||| |||||||| ||||| || || |||||||| || ||||| || | || |
|
|
| T |
39985876 |
tttcttgtcaagaccataagcaatggcagcagcagtgggctcattgataattcgcatgacattaagaccggcaataactccagcatccttggtagcttga |
39985975 |
T |
|
| Q |
166 |
cgttgtgagtcattaaagtaagcaggcacagt |
197 |
Q |
| |
|
|| || |||||||||||||||||||| ||||| |
|
|
| T |
39985976 |
cgctgggagtcattaaagtaagcagggacagt |
39986007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 153
Target Start/End: Original strand, 3147515 - 3147589
Alignment:
| Q |
79 |
ccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatct |
153 |
Q |
| |
|
||||| ||||| || || |||| ||| ||||||||||| ||||||| ||| ||||||||||||||||| |||||| |
|
|
| T |
3147515 |
ccatacgcaatagctgcagcagtaggttcattgattatccgcataatattaaggccagcaataacaccagcatct |
3147589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 153
Target Start/End: Complemental strand, 8382801 - 8382727
Alignment:
| Q |
79 |
ccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatct |
153 |
Q |
| |
|
|||||||||| ||||| |||| |||||||||||||| ||||| ||||||||||||||||| |||| |||||| |
|
|
| T |
8382801 |
ccatatgcaagagcagcggcagttggctcattgattatccgcattacattgaggccagcaatcgcaccagcatct |
8382727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 153
Target Start/End: Original strand, 8602217 - 8602291
Alignment:
| Q |
79 |
ccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatct |
153 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||| ||||| |||||||| |||||||| |||| |||||| |
|
|
| T |
8602217 |
ccatatgcaagagcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatct |
8602291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 153
Target Start/End: Complemental strand, 13333389 - 13333307
Alignment:
| Q |
71 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatct |
153 |
Q |
| |
|
||||||| ||||||||||| || || |||| ||| |||||||||||||| || | ||| |||||||||||| |||| |||||| |
|
|
| T |
13333389 |
tgtcaaggccatatgcaatagctgcagcagtaggttcattgattattcgaatgatattaaggccagcaatagcaccagcatct |
13333307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 10494307 - 10494226
Alignment:
| Q |
71 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatc |
152 |
Q |
| |
|
||||||| ||||||||||| || || |||| ||| ||||||||||| || || ||||| |||||||||||| |||| ||||| |
|
|
| T |
10494307 |
tgtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagcaccagcatc |
10494226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 153
Target Start/End: Original strand, 8538306 - 8538353
Alignment:
| Q |
106 |
tcattgattattcgcataacattgaggccagcaataacacccgcatct |
153 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| ||||| |||||| |
|
|
| T |
8538306 |
tcattgattatccgcattacattgaggccagcaatgacaccagcatct |
8538353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 203
Target Start/End: Original strand, 6789749 - 6789879
Alignment:
| Q |
73 |
tcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgtg |
172 |
Q |
| |
|
||||| |||||||||| ||||| || | || |||||||||||||| |||||||| || |||||||| |||| |||||| ||||| | ||||| | |
|
|
| T |
6789749 |
tcaaggccatatgcaagagcagcagctgttggttcattgattattcgtataacattaagaccagcaatggcaccagcatctaaagtggctttccgttgag |
6789848 |
T |
|
| Q |
173 |
agtcattaaagtaagcaggcacagttataac |
203 |
Q |
| |
|
| ||||| || |||||||||||||| ||||| |
|
|
| T |
6789849 |
aatcattgaaataagcaggcacagtaataac |
6789879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 140
Target Start/End: Complemental strand, 8585639 - 8585570
Alignment:
| Q |
71 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaat |
140 |
Q |
| |
|
||||||| ||||||||||| || || |||| || ||||||||||| | ||||||||| ||||||||||| |
|
|
| T |
8585639 |
tgtcaaggccatatgcaatagctgcagcagtgggttcattgattatcctcataacattaaggccagcaat |
8585570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 8628767 - 8628836
Alignment:
| Q |
71 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaat |
140 |
Q |
| |
|
||||||| ||||||||||| || || |||| || ||||||||||| | ||||||||| ||||||||||| |
|
|
| T |
8628767 |
tgtcaaggccatatgcaatagctgcagcagtggggtcattgattatcctcataacattaaggccagcaat |
8628836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 140
Target Start/End: Complemental strand, 27830808 - 27830739
Alignment:
| Q |
71 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaat |
140 |
Q |
| |
|
||||||| ||||||||||| || || |||| |||||| | ||||| ||||||||||| ||||||||||| |
|
|
| T |
27830808 |
tgtcaaggccatatgcaatagctgcagcagtaggctcgcttattatccgcataacattaaggccagcaat |
27830739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 30775489 - 30775556
Alignment:
| Q |
73 |
tcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaat |
140 |
Q |
| |
|
||||| ||||||||||| || ||||||| |||||||| ||||||| ||||||||| || |||||||| |
|
|
| T |
30775489 |
tcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaat |
30775556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 197
Target Start/End: Original strand, 35132683 - 35132809
Alignment:
| Q |
71 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttg |
170 |
Q |
| |
|
||||||| |||||||||| || || |||| ||| ||||| |||| || |||||||||| | ||||||||| |||| |||||| ||||| | ||||| |
|
|
| T |
35132683 |
tgtcaaggccatatgcaaccgctgcggcagtaggttcattcattactctcataacattgggaccagcaatagcaccagcatctatagtggcttttcgttg |
35132782 |
T |
|
| Q |
171 |
tgagtcattaaagtaagcaggcacagt |
197 |
Q |
| |
|
|| ||| |||| |||||||||||||| |
|
|
| T |
35132783 |
agaatcactaaaataagcaggcacagt |
35132809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 9335822 - 9335754
Alignment:
| Q |
73 |
tcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaata |
141 |
Q |
| |
|
||||| ||||||||||| || || |||| ||| ||||||||||| || || ||||| |||||||||||| |
|
|
| T |
9335822 |
tcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaata |
9335754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 197
Target Start/End: Original strand, 7542461 - 7542587
Alignment:
| Q |
71 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttg |
170 |
Q |
| |
|
||||||| |||||||||| || || |||| ||| ||||| ||| | ||||||||||||||||||||| ||||||||||| ||||| | ||||| |
|
|
| T |
7542461 |
tgtcaaggccatatgcaacagctgcggcagtaggttcattcattgccctcataacattgaggccagcaatggcacccgcatctatagtggcttttcgttg |
7542560 |
T |
|
| Q |
171 |
tgagtcattaaagtaagcaggcacagt |
197 |
Q |
| |
|
|| |||||||| |||||||| ||||| |
|
|
| T |
7542561 |
agaatcattaaaataagcaggtacagt |
7542587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 16657450 - 16657384
Alignment:
| Q |
71 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagc |
137 |
Q |
| |
|
||||||||||||||||||| || || |||| ||| |||||||| ||||| || ||||| |||||||| |
|
|
| T |
16657450 |
tgtcaagaccatatgcaatagctgcagcagtaggttcattgataattcgaatgacattaaggccagc |
16657384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 14703643 - 14703724
Alignment:
| Q |
71 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatc |
152 |
Q |
| |
|
||||||| ||||||||||| || || || | ||| ||||| |||| | ||||||||||||||| ||||||||||| ||||| |
|
|
| T |
14703643 |
tgtcaaggccatatgcaatagctgcagctgtaggttcattcattaccctcataacattgaggccggcaataacaccagcatc |
14703724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 435
Target Start/End: Original strand, 7542789 - 7542825
Alignment:
| Q |
399 |
aaacttcctaccaattagcctctttgcatctacaaaa |
435 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
7542789 |
aaacttcctaccaattaacctcttagcatctacaaaa |
7542825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 34466726 - 34466656
Alignment:
| Q |
71 |
tgtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaata |
141 |
Q |
| |
|
||||||| ||||||||||| || || |||| || |||||||||||| ||| |||||| |||||||||||| |
|
|
| T |
34466726 |
tgtcaagtccatatgcaatagctgcagcagtgggttcattgattatttgcaaaacattaaggccagcaata |
34466656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 12528747 - 12528820
Alignment:
| Q |
79 |
ccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatc |
152 |
Q |
| |
|
|||||||||| |||||||||| || || |||||||| || || ||||||||||||||||| ||||| ||||| |
|
|
| T |
12528747 |
ccatatgcaagagcagctgcagttggttcgttgattatccgtattacattgaggccagcaatgacaccagcatc |
12528820 |
T |
|
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