View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9055_low_18 (Length: 481)
Name: NF9055_low_18
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9055_low_18 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 17 - 481
Target Start/End: Original strand, 47726126 - 47726590
Alignment:
| Q |
17 |
agtgcttgaagagtttaggattagcatatgaaactcttggtccctgaatcattaagtaaagggtatttttcttgtaacatcatcacatagactacttaaa |
116 |
Q |
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| T |
47726126 |
agtgcttgaagagtttaggattagcatatgaaactcttggtccctgaatcattaagtaaagggtatttttcttgtaacatcatcacatagactacttaaa |
47726225 |
T |
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| Q |
117 |
ttcaaaaatggtgaaattgtgaacctacccaatcatggcatgaaagcataaaatggtcagcaccttgacttctgttccaataaggatacttgttggcaac |
216 |
Q |
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| T |
47726226 |
ttcaaaaatggtgaaattgtgaacctacccaatcatggcatgaaagcagaaaatggtcagcaccttgacttatgttccaataaggatacttgttggcaac |
47726325 |
T |
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| Q |
217 |
aatgttgatataatcctcaactaaaagctgtaagcgatgaggattataatctgatcttgactttctaggcttgtaaacatagcgaatgaccttagaaacg |
316 |
Q |
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| T |
47726326 |
aattttgatataatcctcaactaaaagctgtaagcgatgaggattataatctgatcttgactttctaggcttgtaaacatagcgaatgaccttagacacg |
47726425 |
T |
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| Q |
317 |
ctgaaaggaagaaagaaaacatgggccagttcaggatgagtagccttgaatggactcttgttacttgtgtccatttcatcaatgaattgtccttcaatgg |
416 |
Q |
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| T |
47726426 |
ctgaaaggaagaaagaaaacatgggccagttcaggatgagtagccttgaatggactcttgttacttgtgtccatttcatcaatgaattgtccttcaatgg |
47726525 |
T |
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| Q |
417 |
aatatttgttgtttacaggtccatcatgcaccaatggttgttctccttccttgtatacccatacc |
481 |
Q |
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| T |
47726526 |
aatatttgttgtttacaggtccatcatgcaccaatggttgctctccttccttgtatacccatacc |
47726590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 477
Target Start/End: Original strand, 47729070 - 47729163
Alignment:
| Q |
384 |
tgtccatttcatcaatgaattgtccttcaatggaatatttgttgtttacaggtccatcatgcaccaatggttgttctccttccttgtataccca |
477 |
Q |
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| T |
47729070 |
tgtctatttcatcaatgaattgaccttcaattgcatatatgttgttcactggtccatcatgtactattggttgctctccttcttggtataccca |
47729163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 166 - 340
Target Start/End: Complemental strand, 26955734 - 26955568
Alignment:
| Q |
166 |
aaaatggtcagcaccttgacttctgttccaataaggatacttgttggcaacaatgttgatataatcctcaactaaaagctgtaagcgatgaggattataa |
265 |
Q |
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| T |
26955734 |
aaaatggccagcatcttggcttctgttccaataaggatacttgtttgcagcaa-gt-------atcctaaactaaaagctgcaagtggtgaggatcataa |
26955643 |
T |
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| Q |
266 |
tctgatcttgactttctaggcttgtaaacatagcgaatgaccttagaaacgctgaaaggaagaaagaaaacatgg |
340 |
Q |
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| T |
26955642 |
tctgatctggatcttctaggtttgtaaacatagcgaatgaccttagacacactgaaacgaagaaagaaaacatgg |
26955568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 263534 - 263602
Alignment:
| Q |
141 |
ctacccaatcatggcatgaaagcataaaatggtcagcaccttgacttctgttccaataaggatacttgt |
209 |
Q |
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| T |
263534 |
ctacccaatcatggcatgaaagtagaaaatggtcagcaccttggcttctgttccaataaggatacttgt |
263602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 36515067 - 36515134
Alignment:
| Q |
142 |
tacccaatcatggcatgaaagcataaaatggtcagcaccttgacttctgttccaataaggatacttgt |
209 |
Q |
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| T |
36515067 |
tacccaatcatgacaagaaagcatgaaatggtcagctccataacttctattccaataagcatatttgt |
36515134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 49301630 - 49301577
Alignment:
| Q |
142 |
tacccaatcatggcatgaaagcataaaatggtcagcaccttgacttctgttcca |
195 |
Q |
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| T |
49301630 |
tacccaatcatggcaagcaagcatgaagtggtcagcaccatgagttctgttcca |
49301577 |
T |
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