View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9055_low_20 (Length: 469)

Name: NF9055_low_20
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9055_low_20
NF9055_low_20
[»] chr7 (1 HSPs)
chr7 (12-469)||(38930893-38931352)


Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 12 - 469
Target Start/End: Original strand, 38930893 - 38931352
Alignment:
Q  12 gattattcttcaactcattcacttcttgtggactaagcccaaaaacatgagcaagtacttccccaggtgttgcactaatcgctgaatcacgccctatcat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38930893 gattattcttcaactcattcacttcttgtggactaagcccaaaaacatgagcaagtacttccccaggtgttgcactaatcgctgaatcacgccctatcat 38930992  T
Q  112 tgtactaatctcagctctatcatttgttttgaaaactatgtattccaatccctcactctccgcctgttctgccaccgcgaaattctgcggcaccaccaac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38930993 tgtactaatctcagctctatcatttgttttgaaaactatgtattccaatccctcactctccgcctgttctgccactgcgaaattctgcggcaccaccaac 38931092  T
Q  212 aatcttcccctttttacctctccattgaacaccgattttccctcactattcaccacttgaaccctccctcttcctcttgttacatacattatgctgttcg 311  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38931093 aatcttcccctttttacctctccattgaacactgattttccctcactattcaccacttgaaccctccctcttcctcttgttacgtacattatgctgttcg 38931192  T
Q  312 cattcatgttccaatgtggcacaaatataccatcctgcacataagcgaaatatcagttaagttaaatttaaatgatatagttcaatg--taacacgtgac 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  | |||||||||    
T  38931193 cattcatgttccaatgtggcacaaatataccatcctgcacataagcgaaatatcagttaagttaaatttaaatgatatagttcagtgtctgacacgtgac 38931292  T
Q  410 ttctgcaatacagaattgcagaatgatgcacttatttagttaccttgtagaggtaaaccc 469  Q
    ||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||    
T  38931293 ttctgcaattcataattgcagaatgatgcacttatttaattaccttgtagaggtaaaccc 38931352  T

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