View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9055_low_21 (Length: 467)
Name: NF9055_low_21
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9055_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 2425885 - 2426322
Alignment:
| Q |
1 |
agcacaaatttttagtattttgagataaagaatggacaaaagaaaaagcacccaaaagtagaatagcttcagagaataataaaacatgattatttccaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2425885 |
agcacaaatttttagtattttgagataaagaatggacaaaagaaaaagcacccaaaagtagaatagcttcagagaataataaaacatgattatttccaaa |
2425984 |
T |
|
| Q |
101 |
atgaaattgagaagtagatgataaaaataagttagaaagaaactcaactactgaatcaacaatatcaaaagtttgtttggtgggttttgtggattttctt |
200 |
Q |
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| T |
2425985 |
atgaaattgagaagtagatgataaaaataagttagaaagaaactcaactactgaatcaacaatatcaaaagtttgtttggtgggttttgtggattttctt |
2426084 |
T |
|
| Q |
201 |
atccatatgtaaagaagtctaaaacaaaggggaaaagattgatgggaaagagagaaatttgaagatgtgagaatggaaaggagaagttttgcttgtgggt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2426085 |
atccatatgtaaagaagtctaaaacaaaggggaaaagattgatgggaaagagagaaatttgaagatgtgagaatggaaaggagaagtttagcttgtgggt |
2426184 |
T |
|
| Q |
301 |
cagcaacatggagagaggtttgagaattaagtaaggtattgagatgttggtgaagatggtgttgattgaatgaagaagaggttgattgaagggtatttcg |
400 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2426185 |
cagcgacatggagagaggtttgagaattgagtaaggtattgagatgttggtgaagatggtgttgattgaatgaagaagaggttgattgaagggtgtttcg |
2426284 |
T |
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| Q |
401 |
gagatgggaccatgcttgaatgatggatttcgcagagg |
438 |
Q |
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| T |
2426285 |
gagatgggaccatgcttgaatgatggatttcgcagagg |
2426322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 438
Target Start/End: Complemental strand, 22041540 - 22041106
Alignment:
| Q |
1 |
agcacaaatttttagtattttgagataaagaatggacaaaagaaaaagcacccaaaagtagaatagcttcagagaataataaaacatgattatttccaaa |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||| ||| |
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| T |
22041540 |
agcactaatttttagtattttgagataaagaatgaacaaaagaaaaagcacccagaagtaaaatagcttcagagaataataaaacatgactatttc-aaa |
22041442 |
T |
|
| Q |
101 |
atgaaattgagaagtagatgataaaaataagttagaaagaaactcaactactgaatcaacaatatcaaaagtttgtttggtgggttttgtggattttctt |
200 |
Q |
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|| |||||| |||||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||| |||| | ||||| || |
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| T |
22041441 |
atcaaattgcgaagtagatgataaaaataacttagaaagaaactcaactgctgaaccaataatatcaaaagtttgtttggtaagtttattttattttatt |
22041342 |
T |
|
| Q |
201 |
atccatatgtaaagaagtctaaaacaaaggggaaaagattgatgggaaagagagaaatttgaagatgtgagaatggaaaggagaagttttgcttgtgggt |
300 |
Q |
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|||||||||||||||||||||||| |||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
22041341 |
gtccatatgtaaagaagtctaaaacgaagggggaaggattcatgggaaagagagaaatttgaagatgtgagaatggaaaggagaagttttgcttgtaggt |
22041242 |
T |
|
| Q |
301 |
c-agcaacatggagagaggtttgagaattaagtaaggtattgagatgttggtgaagatggtgttgattgaatgaagaagaggttgattgaagggtatttc |
399 |
Q |
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| ||||||||||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
22041241 |
caagcaacatggagagaggtttgggaattgagtagagttttgagatgttggtgaagatggtgttgattgaat---gaagaggttgattgaagggtgtttc |
22041145 |
T |
|
| Q |
400 |
ggagatgggaccatgcttgaatgatggatttcgcagagg |
438 |
Q |
| |
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|||||||||||||||||||||||||| || ||||||| |
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| T |
22041144 |
atagatgggaccatgcttgaatgatggactttgcagagg |
22041106 |
T |
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