View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9055_low_28 (Length: 415)
Name: NF9055_low_28
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9055_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 167 - 298
Target Start/End: Complemental strand, 30409818 - 30409691
Alignment:
| Q |
167 |
aagacctaaatacttctttggttcccttaactttaaaacttatcaatttgatcctacttgggtcttgttaacaaaacttgtgagctaatttcattgcttc |
266 |
Q |
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| T |
30409818 |
aagacctaaatacttttttggttcccttaactttaaaacttatcaatttgatcctacttgggtcttgttaacaaaacttgtgagctaatttcattgcttc |
30409719 |
T |
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| Q |
267 |
aatcgatgagctagtattgtccttctatacga |
298 |
Q |
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| T |
30409718 |
actcgatg----agtattgtccttctatacga |
30409691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 30409975 - 30409922
Alignment:
| Q |
10 |
aagcagagactaaaattgatattagagtgtttagaggaccaataattaaagaaa |
63 |
Q |
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| T |
30409975 |
aagcagagactaaaattgatattagagtgtttagaggaccaataattaaagaaa |
30409922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 279 - 362
Target Start/End: Complemental strand, 30423408 - 30423325
Alignment:
| Q |
279 |
agtattgtccttctatacgagcatccatgacttgagatattttgcgtttgctggtgagtaattgtttggcccatgcaactaaat |
362 |
Q |
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| T |
30423408 |
agtattggccttctatacgagcatccataacttgagaaatcttacgtttgctcatgagtaatggcttggcccatgcaactaaat |
30423325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 363
Target Start/End: Complemental strand, 30412282 - 30412170
Alignment:
| Q |
247 |
tgagctaatttcattgcttcaatcgatgagctagtattgtccttctatacgagcatccatgacttgagatattttgcgtttgctggtgagtaattgtttg |
346 |
Q |
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| T |
30412282 |
tgagctaatttcattgcatcacgcgatgag----tattcaccttctatacgaacatccataacttgagagattttatgtttgttgttgagtaatggcttg |
30412187 |
T |
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| Q |
347 |
gcccatgcaactaaatt |
363 |
Q |
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|||||| |||| ||||| |
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| T |
30412186 |
gcccattcaaccaaatt |
30412170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 391
Target Start/End: Complemental strand, 30409685 - 30409653
Alignment:
| Q |
359 |
aaattacgatccaaaaatggcctgttgttatct |
391 |
Q |
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| T |
30409685 |
aaattacgatccaaaaatggcctgttgttatct |
30409653 |
T |
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