View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9055_low_3 (Length: 731)

Name: NF9055_low_3
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9055_low_3
NF9055_low_3
[»] chr3 (15 HSPs)
chr3 (18-721)||(53167673-53168375)
chr3 (29-201)||(34844382-34844555)
chr3 (118-192)||(35623248-35623322)
chr3 (122-201)||(4252509-4252587)
chr3 (146-201)||(11092179-11092234)
chr3 (147-201)||(42799758-42799812)
chr3 (138-208)||(43303762-43303832)
chr3 (29-69)||(4252415-4252455)
chr3 (147-195)||(10682954-10683002)
chr3 (29-69)||(33793590-33793630)
chr3 (29-69)||(48977526-48977566)
chr3 (82-132)||(1242047-1242098)
chr3 (82-132)||(1178246-1178296)
chr3 (35-69)||(10083844-10083878)
chr3 (35-69)||(10190767-10190801)
[»] chr1 (24 HSPs)
chr1 (29-201)||(37046996-37047170)
chr1 (106-201)||(39012302-39012398)
chr1 (122-213)||(44417447-44417538)
chr1 (122-207)||(39964510-39964596)
chr1 (123-214)||(49101754-49101846)
chr1 (86-156)||(16539657-16539728)
chr1 (100-201)||(41470573-41470675)
chr1 (118-201)||(6127967-6128051)
chr1 (82-208)||(19480531-19480659)
chr1 (82-201)||(39714723-39714843)
chr1 (85-169)||(6416036-6416121)
chr1 (29-69)||(16899641-16899681)
chr1 (140-192)||(30043600-30043652)
chr1 (118-205)||(34228881-34228969)
chr1 (29-69)||(37351472-37351512)
chr1 (147-214)||(15581152-15581219)
chr1 (138-201)||(24857832-24857895)
chr1 (122-200)||(44486142-44486221)
chr1 (147-213)||(38978953-38979019)
chr1 (147-201)||(45232072-45232126)
chr1 (98-214)||(52289698-52289816)
chr1 (27-68)||(19480675-19480716)
chr1 (32-69)||(20999185-20999222)
chr1 (122-201)||(31605832-31605913)
[»] chr2 (11 HSPs)
chr2 (82-201)||(13747578-13747698)
chr2 (114-192)||(18825361-18825440)
chr2 (29-201)||(8192371-8192542)
chr2 (122-214)||(41908622-41908716)
chr2 (27-191)||(26176215-26176380)
chr2 (29-69)||(14486963-14487003)
chr2 (133-201)||(43963985-43964053)
chr2 (30-69)||(35943822-35943861)
chr2 (82-201)||(4618758-4618876)
chr2 (94-131)||(12543219-12543256)
chr2 (99-187)||(40591201-40591290)
[»] chr8 (7 HSPs)
chr8 (99-197)||(34778750-34778849)
chr8 (109-189)||(40136935-40137015)
chr8 (138-201)||(22268935-22268998)
chr8 (100-201)||(8387535-8387635)
chr8 (86-187)||(34639284-34639385)
chr8 (124-215)||(6530804-6530896)
chr8 (29-70)||(34694594-34694635)
[»] chr4 (16 HSPs)
chr4 (118-201)||(25414195-25414279)
chr4 (94-187)||(41621681-41621775)
chr4 (82-201)||(42281177-42281298)
chr4 (82-201)||(37455580-37455700)
chr4 (138-201)||(25434660-25434722)
chr4 (138-201)||(29195106-29195169)
chr4 (138-191)||(4686129-4686182)
chr4 (138-214)||(37980149-37980225)
chr4 (26-69)||(28929817-28929860)
chr4 (138-201)||(38206127-38206190)
chr4 (590-641)||(53253563-53253614)
chr4 (35-69)||(23639762-23639796)
chr4 (35-69)||(23645420-23645454)
chr4 (24-69)||(54127356-54127401)
chr4 (118-198)||(55256179-55256260)
chr4 (138-199)||(56409964-56410025)
[»] chr5 (10 HSPs)
chr5 (37-201)||(19145439-19145602)
chr5 (151-205)||(19373246-19373300)
chr5 (29-69)||(4603915-4603955)
chr5 (138-201)||(16172985-16173048)
chr5 (34-193)||(16247025-16247186)
chr5 (161-214)||(14424597-14424650)
chr5 (24-69)||(23016717-23016762)
chr5 (29-69)||(31206381-31206421)
chr5 (29-69)||(32059459-32059499)
chr5 (140-201)||(18351777-18351838)
[»] chr7 (14 HSPs)
chr7 (86-170)||(23330816-23330901)
chr7 (149-214)||(25956305-25956370)
chr7 (86-172)||(28647006-28647093)
chr7 (29-69)||(38372999-38373039)
chr7 (118-201)||(44628164-44628248)
chr7 (26-69)||(674452-674495)
chr7 (119-201)||(18847404-18847487)
chr7 (86-172)||(22696357-22696443)
chr7 (162-213)||(44146577-44146628)
chr7 (29-63)||(2344447-2344481)
chr7 (122-201)||(5579218-5579299)
chr7 (133-210)||(19612636-19612713)
chr7 (144-189)||(21050148-21050193)
chr7 (86-172)||(21574179-21574267)
[»] chr6 (8 HSPs)
chr6 (82-190)||(6383948-6384056)
chr6 (115-201)||(6691528-6691615)
chr6 (82-172)||(9208285-9208376)
chr6 (162-212)||(24507562-24507612)
chr6 (118-210)||(3869698-3869791)
chr6 (105-197)||(7484227-7484320)
chr6 (82-172)||(17149529-17149620)
chr6 (164-201)||(33560390-33560427)
[»] scaffold0337 (1 HSPs)
scaffold0337 (162-212)||(1753-1803)
[»] scaffold0065 (1 HSPs)
scaffold0065 (162-212)||(12189-12239)
[»] scaffold0049 (1 HSPs)
scaffold0049 (29-69)||(66892-66932)


Alignment Details
Target: chr3 (Bit Score: 652; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 18 - 721
Target Start/End: Original strand, 53167673 - 53168375
Alignment:
Q  18 gtctatggtctaaggaccgactaatccgaggggcccaatcccaccgtccactattttcgcatcttttaaagccagggcaaagctctgtatggactggcct 117  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  53167673 gtctacggtctaaggaccgactaatccgaggggcccaatcccaccgtccactattgtcgcatcttttaaagccagggcaaagctctgtatggactggcct 53167772  T
Q  118 accaaaattggcaccggggtaatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaactcaaatgagttaagca 217  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  53167773 accaaaattggcaccggggtaatcaaacttgagaccttgagagaagcacactccatggtctcaagccaacaccgctaggccaactcaaatgagttaagca 53167872  T
Q  218 agagaaactcttaaaattatggaattcctgaaatggtgcataaatcttcattgcgcgacttttgctttactcgggcatattgtgtccatgaggtgtagtg 317  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53167873 agagaaactcttaagattatggaattcctgaaatggtgcataaatcttcattgcgcgacttttgctttactcgggcatattgtgtccatgaggtgtagtg 53167972  T
Q  318 gtaagagcttgaccttgtaaccccaagagacaaggttcaaattccctaagggatatttgtaaaatgactattagaatctcttaaaaacatagctggtata 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  53167973 gtaagagcttgaccttgtaaccccaagagacaaggttcaaattccctaagggatatttgtaaaatgactattagaatcacttaaaaacatagctggtata 53168072  T
Q  418 gtcgttctgtgttggccgatgtggagtttctatttacaagttcgaatcctgttttcctctttggtgggaccctttcctggaccctgcgttttcacttgca 517  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  53168073 gtcgttctgtgttggccgatatggagtttctatttacaagttcgaatcctgttttcctctttggtgggaccctttcctggaccctgcgttttcacttgcc 53168172  T
Q  518 ggagctttagtgcactgggctgccctttttactattagtatcacttagtgctgttgaatgcataagtgtaatatgacagaaggccaaaaatctgccatat 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  53168173 ggagctttagtgcactgggctgccctttttactattagtatcacttagtgctgttgaatgcataagtgtaatatgacag-aggccaaaaatctgccatat 53168271  T
Q  618 gaacaagccattgtggcccatggcaccacaatggcgggcattcctcacaagttctctatcgcggttgttcaaaaataccccacgacattccaccatggtc 717  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  53168272 gaacaagccattgtggcccttggcaccacaatggcaggcattcctcacaagttgtctatcgcggttgttcaaaaataccccacgacattccaccatggtc 53168371  T
Q  718 tctg 721  Q
    ||||    
T  53168372 tctg 53168375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 29 - 201
Target Start/End: Complemental strand, 34844555 - 34844382
Alignment:
Q  29 aaggaccgactaatccgaggggcccaatcccaccgtccactattttcgcatcttttaaagccagggcaaagctctgtatggactggcctaccaaaattgg 128  Q
    |||||||||||||||||||||| ||||||||||| ||||||      |   | ||||||||||  ||||||||||||||| ||| | | ||| |||||||    
T  34844555 aaggaccgactaatccgaggggtccaatcccaccatccacttgcgggggcccatttaaagccatagcaaagctctgtatgtactagtccaccgaaattgg 34844456  T
Q  129 caccgg-ggtaatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaac 201  Q
    | | || || |||| ||| |||||||||||| | ||||||||||| ||||||||||||||| ||| ||| ||||    
T  34844455 ctctggagggaatcgaacctgagaccttgagaggagcacactccaaggtctcaagccaacaacaccagggcaac 34844382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 35623248 - 35623322
Alignment:
Q  118 accaaaattggcaccggggtaatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccac 192  Q
    |||||| |||||||||||  |||| ||| |||||||||||| | ||||||||||| |||| ||||||||||||||    
T  35623248 accaaatttggcaccgggtgaatcgaacatgagaccttgagaggagcacactccaaggtcccaagccaacaccac 35623322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 4252509 - 4252587
Alignment:
Q  122 aaattggcaccgg-ggtaatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaac 201  Q
    ||||||||||| | || ||||||||||||||||||||| | ||||||||||| | ||||||||||  ||||||||||||||    
T  4252509 aaattggcaccagagggaatcaaacttgagaccttgagaggagcacactccaagatctcaagcca--accactaggccaac 4252587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 11092179 - 11092234
Alignment:
Q  146 ttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaac 201  Q
    ||||||||||||| | |||||||| || |||| |||||||||||||||||||||||    
T  11092179 ttgagaccttgagagtagcacactacaaggtcccaagccaacaccactaggccaac 11092234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 42799758 - 42799812
Alignment:
Q  147 tgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaac 201  Q
    |||||||||||| | ||||||||||| |||| |||||||||||||| ||||||||    
T  42799758 tgagaccttgagaggagcacactccaaggtcccaagccaacaccaccaggccaac 42799812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 208
Target Start/End: Complemental strand, 43303832 - 43303762
Alignment:
Q  138 aatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaactcaaatg 208  Q
    |||||||| |||||||| ||| | ||||| ||||| |||||||||||| |||||| |||||||| ||||||    
T  43303832 aatcaaacctgagacctggagaggagcacgctccaaggtctcaagccatcaccaccaggccaacccaaatg 43303762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 4252415 - 4252455
Alignment:
Q  29 aaggaccgactaatccgaggggcccaatcccaccgtccact 69  Q
    ||||| |||||||||||||||| ||||||||||||||||||    
T  4252415 aaggatcgactaatccgaggggaccaatcccaccgtccact 4252455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 10682954 - 10683002
Alignment:
Q  147 tgagaccttgagtgaagcacactccatggtctcaagccaacaccactag 195  Q
    |||||| ||||| ||||||||||||| ||||||||||||| ||||||||    
T  10682954 tgagactttgagagaagcacactccaaggtctcaagccaataccactag 10683002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 33793630 - 33793590
Alignment:
Q  29 aaggaccgactaatccgaggggcccaatcccaccgtccact 69  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  33793630 aaggactgactaatccgaggggaccaatcccaccgtccact 33793590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 48977566 - 48977526
Alignment:
Q  29 aaggaccgactaatccgaggggcccaatcccaccgtccact 69  Q
    |||||||||||||||||||||| |||||||||||| |||||    
T  48977566 aaggaccgactaatccgaggggaccaatcccaccgcccact 48977526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 1242098 - 1242047
Alignment:
Q  82 tttaaagccagggcaaagctctgtatggac-tggcctaccaaaattggcacc 132  Q
    ||||||||||| |||||||||||||||||| | ||| |||||||||||||||    
T  1242098 tttaaagccagagcaaagctctgtatggacttagcccaccaaaattggcacc 1242047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 1178296 - 1178246
Alignment:
Q  82 tttaaagccagggcaaagctctgtatggactggcctaccaaaattggcacc 132  Q
    ||||||||||| |||||| |||||||||||| ||| ||| |||||||||||    
T  1178296 tttaaagccagagcaaagttctgtatggacttgcccaccgaaattggcacc 1178246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 10083844 - 10083878
Alignment:
Q  35 cgactaatccgaggggcccaatcccaccgtccact 69  Q
    |||||||||||||||| ||||||||||||||||||    
T  10083844 cgactaatccgaggggaccaatcccaccgtccact 10083878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 69
Target Start/End: Original strand, 10190767 - 10190801
Alignment:
Q  35 cgactaatccgaggggcccaatcccaccgtccact 69  Q
    |||||||||||||||| ||||||||||||||||||    
T  10190767 cgactaatccgaggggaccaatcccaccgtccact 10190801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 29 - 201
Target Start/End: Complemental strand, 37047170 - 37046996
Alignment:
Q  29 aaggaccgactaatccgaggggcccaatcccaccgtccactattttcg-catcttttaaagccagggcaaagctctgtatggactggcctaccaaaattg 127  Q
    |||| ||||||||||| ||||| ||||||||||||||||||  |   | |  | |||||||| || ||||||||||||||||||| ||| |||||||||     
T  37047170 aagggccgactaatcctaggggtccaatcccaccgtccacttgtgggggccccatttaaagctagagcaaagctctgtatggactagcccaccaaaattt 37047071  T
Q  128 gcacc-ggggtaatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaac 201  Q
    | ||| |||| |||||||| |||||||||||| | ||||||||||| |||| |||||||||||||| || |||||    
T  37047070 gtaccagggggaatcaaacctgagaccttgagaggagcacactccaaggtcccaagccaacaccaccagaccaac 37046996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 106 - 201
Target Start/End: Complemental strand, 39012398 - 39012302
Alignment:
Q  106 atggactggcctaccaaaattggcaccg-gggtaatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaac 201  Q
    ||||||| ||| ||| |||||||||||| ||| |||||||| | ||||||||||   ||||||||||| |||| |||||||||||||||||||||||    
T  39012398 atggactagcccaccgaaattggcaccgaggggaatcaaacctaagaccttgagaagagcacactccaaggtcccaagccaacaccactaggccaac 39012302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 44417447 - 44417538
Alignment:
Q  122 aaattggcaccggggtaatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaactcaaatgagtta 213  Q
    ||||||||||||||| |||||||| |||||||||||| | ||||||||||| |||| ||||||| ||||| ||| ||||  |||||| ||||    
T  44417447 aaattggcaccgggggaatcaaacctgagaccttgagagcagcacactccaaggtcccaagccagcaccattagaccaaaccaaatgggtta 44417538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 207
Target Start/End: Complemental strand, 39964596 - 39964510
Alignment:
Q  122 aaattggcaccgg-ggtaatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaactcaaat 207  Q
    ||||||||||| | || |||||||| |||||||||||| | ||||||||||| |||| |||||||||||| |||||||||| |||||    
T  39964596 aaattggcaccagagggaatcaaacctgagaccttgagaggagcacactccaaggtcgcaagccaacacctctaggccaacccaaat 39964510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 123 - 214
Target Start/End: Original strand, 49101754 - 49101846
Alignment:
Q  123 aattggcacc-ggggtaatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaactcaaatgagttaa 214  Q
    |||||||||| |||| |||||||  | |||||||||| | ||||||||||| ||||| ||||||||| |||||||||||| |||||| |||||    
T  49101754 aattggcaccagggggaatcaaatgtaagaccttgagaggagcacactccaaggtctgaagccaacaacactaggccaacccaaatgggttaa 49101846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 16539728 - 16539657
Alignment:
Q  86 aagccagggcaaagctctgtatggactggcctaccaaaattggcacc-ggggtaatcaaacttgagaccttg 156  Q
    ||||||| ||||||||||||||||||| ||| ||||||||||||||| | || |||||||| ||||||||||    
T  16539728 aagccagcgcaaagctctgtatggacttgcccaccaaaattggcaccagagggaatcaaacctgagaccttg 16539657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 201
Target Start/End: Original strand, 41470573 - 41470675
Alignment:
Q  100 ctctgtatggactggcctaccaaaattggcaccg-gggtaatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggcc 198  Q
    ||||||| ||||| ||| ||  |||||||||| | ||| |||| |||||||||||||||| | |||| |||||| |||||||||||||||||||  ||||    
T  41470573 ctctgtacggactagcccactgaaattggcactgtggggaatcgaacttgagaccttgagaggagcatactccaaggtctcaagccaacaccaccgggcc 41470672  T
Q  199 aac 201  Q
    |||    
T  41470673 aac 41470675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 6127967 - 6128051
Alignment:
Q  118 accaaaattggcaccggggt-aatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaac 201  Q
    |||||||||||||||||||  |||| |||||||||||||||| | ||||| ||||| |||| ||| |||||||||| || |||||    
T  6127967 accaaaattggcaccggggagaatcgaacttgagaccttgagaggagcacgctccaaggtcccaaaccaacaccaccagaccaac 6128051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 208
Target Start/End: Complemental strand, 19480659 - 19480531
Alignment:
Q  82 tttaaagccagggcaaagctctgtatggactg-gcctaccaaaattggcaccg-gggtaatcaaacttgagaccttgagtgaagcacactccatggtctc 179  Q
    ||||||||||| ||| |||||| ||||||||  ||| || ||||||||||||| ||| |||| ||  |||||||||||| | ||||||||||| | || |    
T  19480659 tttaaagccagagcatagctctatatggacttagcccactaaaattggcaccgcggggaatcgaatgtgagaccttgagaggagcacactccaagatccc 19480560  T
Q  180 aagccaacaccactaggccaactcaaatg 208  Q
    ||| ||||||||  |||||||| ||||||    
T  19480559 aagtcaacaccataaggccaacccaaatg 19480531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 201
Target Start/End: Original strand, 39714723 - 39714843
Alignment:
Q  82 tttaaagccagggcaaagctctgtatggactggcctaccaaaattggcaccggggt-aatcaaacttgagaccttgagtgaagcacactccatggtctca 180  Q
    |||||| |||| |||||||||    |||||| ||| ||| |||| ||||||| ||  ||||||||||||||||||||| | ||||||||||| | || ||    
T  39714723 tttaaatccagagcaaagctccccttggactagcccaccgaaatcggcaccgaggagaatcaaacttgagaccttgagaggagcacactccaagatccca 39714822  T
Q  181 agccaacaccactaggccaac 201  Q
    ||||||| |||||| ||||||    
T  39714823 agccaacgccactatgccaac 39714843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 6416036 - 6416121
Alignment:
Q  85 aaagccagggcaaagctctgtatggactggcctaccaaaattggcaccggg-gtaatcaaacttgagaccttgagtgaagcacact 169  Q
    |||| ||| |||||||| |||||||||| ||| |||||| ||||||||||| | ||||||||  ||||||||||| | ||||||||    
T  6416036 aaagtcagagcaaagctttgtatggactagcccaccaaagttggcaccgggaggaatcaaacccgagaccttgagaggagcacact 6416121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 16899681 - 16899641
Alignment:
Q  29 aaggaccgactaatccgaggggcccaatcccaccgtccact 69  Q
    |||||||||||||||||||||| |||||| |||||||||||    
T  16899681 aaggaccgactaatccgaggggaccaatctcaccgtccact 16899641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 30043600 - 30043652
Alignment:
Q  140 tcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccac 192  Q
    |||||| |||||||||||  ||||||||||||| ||||||||||| |||||||    
T  30043600 tcaaacctgagaccttgatagaagcacactccaaggtctcaagcctacaccac 30043652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 205
Target Start/End: Complemental strand, 34228969 - 34228881
Alignment:
Q  118 accaaaattggcaccggggt-aatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaactcaa 205  Q
    ||||||||||||||||| |  |||| ||| |||||||||||| | | ||||||||  |||| |||||||||||||| || |||||||||    
T  34228969 accaaaattggcaccggagagaatccaacctgagaccttgagaggaacacactccgaggtcccaagccaacaccaccagaccaactcaa 34228881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 37351472 - 37351512
Alignment:
Q  29 aaggaccgactaatccgaggggcccaatcccaccgtccact 69  Q
    |||||||||||||||||||||| |||||||||||| |||||    
T  37351472 aaggaccgactaatccgaggggaccaatcccaccgcccact 37351512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 15581152 - 15581219
Alignment:
Q  147 tgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaactcaaatgagttaa 214  Q
    ||||||||| || | ||||||||||| |||| |||||||||||||| |||||||| ||| || |||||    
T  15581152 tgagacctttagaggagcacactccaaggtcccaagccaacaccaccaggccaacccaagtgggttaa 15581219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 24857832 - 24857895
Alignment:
Q  138 aatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaac 201  Q
    |||||||| ||||| |||||| ||||| ||||||| |||| | |||||||||||| ||||||||    
T  24857832 aatcaaacctgagagcttgagagaagcccactccaaggtccctagccaacaccaccaggccaac 24857895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 44486142 - 44486221
Alignment:
Q  122 aaattggcaccggggt-aatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaa 200  Q
    |||||||||||||||  |||  || ||||||||||||| | ||||||||||| |||  ||| ||||||||||||||||||    
T  44486142 aaattggcaccggggagaattgaatttgagaccttgagaggagcacactccaaggttccaaaccaacaccactaggccaa 44486221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 213
Target Start/End: Original strand, 38978953 - 38979019
Alignment:
Q  147 tgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaactcaaatgagtta 213  Q
    |||||||||| |  |||||||||||  ||||||||| ||| |||||||||||||| |||||| ||||    
T  38978953 tgagaccttgtggaaagcacactcctaggtctcaagtcaataccactaggccaacccaaatgggtta 38979019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 45232126 - 45232072
Alignment:
Q  147 tgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaac 201  Q
    |||||||||||| | ||| ||||||| ||||| ||||| ||||||||||||||||    
T  45232126 tgagaccttgagaggagcgcactccaaggtcttaagcctacaccactaggccaac 45232072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 214
Target Start/End: Complemental strand, 52289816 - 52289698
Alignment:
Q  98 agctctgtatggactg-gcctaccaaaattggcaccggggt-aatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactag 195  Q
    |||| ||||||||||  |||||||||| |||||||| |||  ||||||| |||||| ||| || | ||| ||||||| ||||  ||| ||||||||||||    
T  52289816 agctttgtatggacttagcctaccaaatttggcaccagggagaatcaaatttgagaacttaagaggagcgcactccaaggtcataagtcaacaccactag 52289717  T
Q  196 gccaactcaaatgagttaa 214  Q
     ||||  ||||||||||||    
T  52289716 accaatccaaatgagttaa 52289698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 68
Target Start/End: Complemental strand, 19480716 - 19480675
Alignment:
Q  27 ctaaggaccgactaatccgaggggcccaatcccaccgtccac 68  Q
    ||||||||||||||| |||||||  |||||||||||||||||    
T  19480716 ctaaggaccgactaacccgagggatccaatcccaccgtccac 19480675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 20999185 - 20999222
Alignment:
Q  32 gaccgactaatccgaggggcccaatcccaccgtccact 69  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  20999185 gaccgactaatccgaggggtccaataccaccgtccact 20999222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 31605832 - 31605913
Alignment:
Q  122 aaattggcaccggggt-aatcaaacttgagaccttgagt-gaagcacactccatggtctcaagccaacaccactaggccaac 201  Q
    |||||||||||||||  |||| ||||||||||||||||  | |||||||| || |||| |||||||||||||  ||||||||    
T  31605832 aaattggcaccggggagaatcgaacttgagaccttgaggaggagcacacttcaaggtcccaagccaacaccatcaggccaac 31605913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 82 - 201
Target Start/End: Original strand, 13747578 - 13747698
Alignment:
Q  82 tttaaagccagggcaaagctctgtatggactggcctaccaaaattggcacc-ggggtaatcaaacttgagaccttgagtgaagcacactccatggtctca 180  Q
    ||||||||||| ||||||| ||||||||||| ||| ||| |||| |||||| |||| | |||||| |||||||||| | | |||| |||||| |||| ||    
T  13747578 tttaaagccagagcaaagcactgtatggactagcccaccgaaatcggcaccggggggattcaaacctgagaccttgggaggagcatactccaaggtccca 13747677  T
Q  181 agccaacaccactaggccaac 201  Q
    |||||||||||||| ||||||    
T  13747678 agccaacaccactaagccaac 13747698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 18825440 - 18825361
Alignment:
Q  114 gcctaccaaaattggcaccggggtaa-tcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccac 192  Q
    ||||||| ||||||||||||||| || ||||||||||||||||||| | ||||||||||  |||| ||||||||||||||    
T  18825440 gcctaccgaaattggcaccggggaaaatcaaacttgagaccttgagaggagcacactcctaggtcccaagccaacaccac 18825361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 29 - 201
Target Start/End: Original strand, 8192371 - 8192542
Alignment:
Q  29 aaggaccgactaatccgaggggcccaatcccaccgtccactattttcgcatcttttaaagccagggcaaagctctgtatggactggcctaccaaaattgg 128  Q
    ||||||||||||||||||||||||||||||||||| |||||      |   | ||  ||||||| |||||||||| |||||||| ||| ||| | |||||    
T  8192371 aaggaccgactaatccgaggggcccaatcccaccgcccacttgcgaggggccgttctaagccagagcaaagctctatatggacttgcccaccgacattgg 8192470  T
Q  129 caccgg-ggtaatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaac 201  Q
    |||| | || |||| ||| |||||||||||| | ||||||||||| | || |||||||  ||||||||||||||    
T  8192471 caccagagggaatcgaacctgagaccttgagaggagcacactccaagatcccaagcca--accactaggccaac 8192542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 214
Target Start/End: Original strand, 41908622 - 41908716
Alignment:
Q  122 aaattggcaccgggg-taatcaaacttgagaccttgagt-gaagcacactccatggtctcaagccaacaccactaggccaactcaaatgagttaa 214  Q
    ||||||||||||||| ||||| ||||||||||||||||  | ||||||||||| |||||||| || ||||||| |||||||| ||| || |||||    
T  41908622 aaattggcaccggggataatcgaacttgagaccttgaggaggagcacactccaaggtctcaaaccgacaccaccaggccaacccaagtgggttaa 41908716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 191
Target Start/End: Original strand, 26176215 - 26176380
Alignment:
Q  27 ctaaggaccgactaatccgaggggcccaatcccaccgtccactattttcgcatcttttaaagccagggcaaagctctgtatggactggcctaccaaaatt 126  Q
    ||||||||||||||||| || ||| ||||||||||||||||||      |   | |||||| |||  |||||| |||||||||||| | | |||||||||    
T  26176215 ctaaggaccgactaatctgaagggtccaatcccaccgtccacttgcgggggcccatttaaatccaaagcaaaggtctgtatggactaggccaccaaaatt 26176314  T
Q  127 ggcacc-ggggtaatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacacca 191  Q
    |||||| |||  |||| ||  |||||||||||| | ||||||| ||| |||| |||| ||||||||    
T  26176315 ggcaccagggagaatcgaatctgagaccttgagaggagcacaccccaaggtcccaagtcaacacca 26176380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 14487003 - 14486963
Alignment:
Q  29 aaggaccgactaatccgaggggcccaatcccaccgtccact 69  Q
    |||||||||||||||||||||| |||||||||||| |||||    
T  14487003 aaggaccgactaatccgaggggaccaatcccaccgcccact 14486963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 43963985 - 43964053
Alignment:
Q  133 ggggtaatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaac 201  Q
    |||| |||||||| |||||||||||| | ||||||||||| |||| ||| ||||||| ||||| |||||    
T  43963985 gggggaatcaaacatgagaccttgagaggagcacactccaaggtcccaaaccaacactactagaccaac 43964053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 69
Target Start/End: Complemental strand, 35943861 - 35943822
Alignment:
Q  30 aggaccgactaatccgaggggcccaatcccaccgtccact 69  Q
    |||||| |||||||||||||| ||||||||||||||||||    
T  35943861 aggaccaactaatccgaggggtccaatcccaccgtccact 35943822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 201
Target Start/End: Original strand, 4618758 - 4618876
Alignment:
Q  82 tttaaagccagggcaaagctctgtatggactggcctaccaaaattggcacc-ggggtaatcaaacttgagaccttgagtgaagcacactccatggtctca 180  Q
    ||||||||||| |||||| | |||||||||| |||  || ||||||||||| |||| |||| ||| ||| |||||||| | |||| |||||| | |  ||    
T  4618758 tttaaagccagagcaaagttttgtatggacttgcccgccgaaattggcaccaggggaaatcgaacctgaaaccttgagaggagcatactccaagattcca 4618857  T
Q  181 agccaacaccactaggccaac 201  Q
    |||||  ||||||||||||||    
T  4618858 agcca--accactaggccaac 4618876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 12543256 - 12543219
Alignment:
Q  94 gcaaagctctgtatggactggcctaccaaaattggcac 131  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  12543256 gcaaagctctgtatggacttgcccaccaaaattggcac 12543219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 40591290 - 40591201
Alignment:
Q  99 gctctgtatggactggcctaccaaaattggcaccggg-gtaatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaac 187  Q
    |||||||||||||| ||| ||| |||||| |||| |  | |||||||| |||||| ||||| | ||||||||||| | ||||||||||||    
T  40591290 gctctgtatggacttgcccaccgaaattgccaccagaagaaatcaaacctgagactttgagaggagcacactccaagatctcaagccaac 40591201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 34778849 - 34778750
Alignment:
Q  99 gctctgtatggactggcctaccaaaattggcaccggggtaa-tcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggc 197  Q
    |||||||||||||| ||| ||| |||||||||||| || || ||||||||||||||||||  | |||||||| || ||||||||||||||||||| ||||    
T  34778849 gctctgtatggactagcccaccgaaattggcaccgtggaaaatcaaacttgagaccttgaaaggagcacactgcaaggtctcaagccaacaccaccaggc 34778750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 40136935 - 40137015
Alignment:
Q  109 gactggcctaccaaaattggcaccggggtaatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacac 189  Q
    |||| ||| ||| ||||||||||||||  |||||||| |||||||||||| | ||||||||||| |||| |||||||||||    
T  40136935 gactagcccaccgaaattggcaccgggagaatcaaacctgagaccttgagaggagcacactccaaggtcccaagccaacac 40137015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 22268935 - 22268998
Alignment:
Q  138 aatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaac 201  Q
    |||||||||||||||||||||   ||||||||||| |||| |||||||||||||| ||||||||    
T  22268935 aatcaaacttgagaccttgagaagagcacactccaaggtcccaagccaacaccaccaggccaac 22268998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 100 - 201
Target Start/End: Original strand, 8387535 - 8387635
Alignment:
Q  100 ctctgtatggactggcctaccaaaattggcacc-ggggtaatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggcc 198  Q
    ||||||||||||| ||| ||||||||||||||| | || |||| ||||||||||| |||| |||||| |||| | | ||||||| ||  |||||||||||    
T  8387535 ctctgtatggacttgcccaccaaaattggcaccagaggaaatcgaacttgagaccctgagagaagcaaactctaagatctcaagaca--accactaggcc 8387632  T
Q  199 aac 201  Q
    |||    
T  8387633 aac 8387635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 187
Target Start/End: Original strand, 34639284 - 34639385
Alignment:
Q  86 aagccagggcaaagctctgtatggactggcctaccaaaattggcaccggggtaatcaaacttgagaccttgagtgaagcacactccatggtctcaagcca 185  Q
    ||||||| |||||||||||||||||||  || ||| ||||||||||| | |  ||| | | |||||||||||| | ||||||||||| | || |||||||    
T  34639284 aagccagagcaaagctctgtatggacttacccaccgaaattggcaccagagggatcgagcctgagaccttgagaggagcacactccaagatcccaagcca 34639383  T
Q  186 ac 187  Q
    ||    
T  34639384 ac 34639385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 6530896 - 6530804
Alignment:
Q  124 attggcaccggggt-aatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaactcaaatgagttaag 215  Q
    |||||||||||||  |||| ||| |||||| ||||| | ||||||||||  |||| |||||||||||||| |||||||| ||| || ||||||    
T  6530896 attggcaccggggagaatcgaacctgagacattgagaggagcacactcctaggtcccaagccaacaccaccaggccaacccaagtgggttaag 6530804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 34694594 - 34694635
Alignment:
Q  29 aaggaccgactaatccgaggggcccaatcccaccgtccacta 70  Q
    |||||| |||||||| |||||| |||||||||||||||||||    
T  34694594 aaggacagactaatctgaggggaccaatcccaccgtccacta 34694635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 25414195 - 25414279
Alignment:
Q  118 accaaaattggcaccggggt-aatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaac 201  Q
    |||||||||||||||||||  |||||||| |||||| ||||| | ||||||||||| ||||||||||||||||||  ||||||||    
T  25414195 accaaaattggcaccggggagaatcaaacctgagactttgagaggagcacactccaaggtctcaagccaacaccagaaggccaac 25414279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 94 - 187
Target Start/End: Original strand, 41621681 - 41621775
Alignment:
Q  94 gcaaagctctgtatggactggcctaccaaaattggcacc-ggggtaatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaac 187  Q
    ||||||||||||||||| | ||| ||||||||||||||| | || |||||||| |||||||||||| | |||| |||||| | ||||||||||||    
T  41621681 gcaaagctctgtatggatttgcccaccaaaattggcaccagaggaaatcaaacatgagaccttgagaggagcaaactccaagatctcaagccaac 41621775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 82 - 201
Target Start/End: Original strand, 42281177 - 42281298
Alignment:
Q  82 tttaaagccagggcaaagctctgtatggactggcctacca-aaattggcaccggggta-atcaaacttgagaccttgagtgaagcacactccatggtctc 179  Q
    ||||||||||| |||||| | |||||||||| ||| |||  |||| ||||||||||   ||||||| |||||||||||| | |||||||| || |||| |    
T  42281177 tttaaagccagagcaaagttatgtatggactagcccaccggaaataggcaccgggggggatcaaacctgagaccttgagaggagcacactacaaggtccc 42281276  T
Q  180 aagccaacaccactaggccaac 201  Q
    |||||||||||||  |||||||    
T  42281277 aagccaacaccacctggccaac 42281298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 201
Target Start/End: Complemental strand, 37455700 - 37455580
Alignment:
Q  82 tttaaagccagggcaaagctctgtatggactggcctaccaaaattggcaccggggtaatcaaacttgagaccttgagtgaagcacactcc-atggtctca 180  Q
    ||||||||||| ||||| |||| |||||| | ||| |   ||||||||||| ||| |||| ||| |||||||||||| | |||| ||||| | |||| ||    
T  37455700 tttaaagccagagcaaatctctatatggattagcccattgaaattggcaccaggggaatcgaacctgagaccttgagaggagcatactccaaaggtccca 37455601  T
Q  181 agccaacaccactaggccaac 201  Q
    |||||||||||| ||||||||    
T  37455600 agccaacaccaccaggccaac 37455580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 25434660 - 25434722
Alignment:
Q  138 aatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaac 201  Q
    |||||||| |||||||||||| ||||||||||||| |||| |||||| ||||||| ||||||||    
T  25434660 aatcaaacctgagaccttgagagaagcacactccaaggtcccaagcc-acaccaccaggccaac 25434722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 29195169 - 29195106
Alignment:
Q  138 aatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaac 201  Q
    |||| |||||| ||||||||| | ||||||||||| |||| |||||||||||||| ||||||||    
T  29195169 aatcgaacttgcgaccttgagaggagcacactccaaggtcccaagccaacaccaccaggccaac 29195106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 4686129 - 4686182
Alignment:
Q  138 aatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacacca 191  Q
    |||||||| |||||| ||||| | ||||||||||| ||||||||||||||||||    
T  4686129 aatcaaacctgagacattgagaggagcacactccaaggtctcaagccaacacca 4686182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 37980149 - 37980225
Alignment:
Q  138 aatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaactcaaatgagttaa 214  Q
    |||| ||| |||||||||||| | ||||||||||| |||| |||||||||| ||| |||||||| ||| ||| ||||    
T  37980149 aatcgaacctgagaccttgagaggagcacactccaaggtcccaagccaacatcaccaggccaacccaagtgaattaa 37980225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 28929860 - 28929817
Alignment:
Q  26 tctaaggaccgactaatccgaggggcccaatcccaccgtccact 69  Q
    |||||||||||||||||| |||||| ||||||| ||||||||||    
T  28929860 tctaaggaccgactaatctgaggggtccaatccaaccgtccact 28929817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 38206127 - 38206190
Alignment:
Q  138 aatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaac 201  Q
    |||||||| |||||||||||| | ||||||||||| |||| ||||||| |||||| ||| ||||    
T  38206127 aatcaaacctgagaccttgagaggagcacactccaaggtcccaagccagcaccaccaggtcaac 38206190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 590 - 641
Target Start/End: Complemental strand, 53253614 - 53253563
Alignment:
Q  590 atgacagaaggccaaaaatctgccatatgaacaagccattgtggcccatggc 641  Q
    |||||||||||||||||||| ||||||| || | |||||||||||| |||||    
T  53253614 atgacagaaggccaaaaatccgccatataaaaatgccattgtggcctatggc 53253563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 23639796 - 23639762
Alignment:
Q  35 cgactaatccgaggggcccaatcccaccgtccact 69  Q
    |||||||||||||||| ||||||||||||||||||    
T  23639796 cgactaatccgaggggaccaatcccaccgtccact 23639762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 23645454 - 23645420
Alignment:
Q  35 cgactaatccgaggggcccaatcccaccgtccact 69  Q
    |||||||||||||||| ||||||||||||||||||    
T  23645454 cgactaatccgaggggaccaatcccaccgtccact 23645420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 54127356 - 54127401
Alignment:
Q  24 ggtctaaggaccgactaatccgaggggcccaatcccaccgtccact 69  Q
    |||| ||| |||||||||||||||||| |||||||||||| |||||    
T  54127356 ggtccaagaaccgactaatccgaggggaccaatcccaccgcccact 54127401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 198
Target Start/End: Original strand, 55256179 - 55256260
Alignment:
Q  118 accaaaattggcaccggggt-aatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggcc 198  Q
    |||||||||||||||| ||  |||| ||| |||| ||||||| |||||||||||||  ||| |||||||| ||||| |||||    
T  55256179 accaaaattggcaccgaggagaatcgaacctgaggccttgagggaagcacactccaatgtcacaagccaataccaccaggcc 55256260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 56410025 - 56409964
Alignment:
Q  138 aatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggcca 199  Q
    |||| ||| |||||||||||| | ||||||||||| |||| |||||||||| ||| ||||||    
T  56410025 aatcgaacctgagaccttgagaggagcacactccaaggtcccaagccaacagcaccaggcca 56409964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 201
Target Start/End: Original strand, 19145439 - 19145602
Alignment:
Q  37 actaatccgaggggcccaatcccaccgtccactattttcgcatcttttaaagccagggcaaagctctgtatggactggcctaccaaaattggcacc-ggg 135  Q
    |||||||||||||| |||||||||||| |||||      | | | ||||||||||| ||||||||||||||||||| ||| ||| ||||||||||| | |    
T  19145439 actaatccgaggggaccaatcccaccgcccacttgcgggggaccatttaaagccagagcaaagctctgtatggacttgcccaccgaaattggcaccagag 19145538  T
Q  136 gtaatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaac 201  Q
    | |||| |||  ||||||||||| | |||| |||||| | || |||| ||  ||||||||||||||    
T  19145539 ggaatcgaaccggagaccttgagaggagcatactccaagatcccaagtca--accactaggccaac 19145602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 19373300 - 19373246
Alignment:
Q  151 accttgagtgaagcacactccatggtctcaagccaacaccactaggccaactcaa 205  Q
    |||||||| | ||||||||||| ||||||||||||||||||| ||||||||||||    
T  19373300 accttgagagtagcacactccaaggtctcaagccaacaccaccaggccaactcaa 19373246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 4603955 - 4603915
Alignment:
Q  29 aaggaccgactaatccgaggggcccaatcccaccgtccact 69  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  4603955 aaggaccgactaatccgaggggaccaatcccaccgtccact 4603915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 16172985 - 16173048
Alignment:
Q  138 aatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaac 201  Q
    |||| ||| |||||||||||| | ||||||||||| |||||||||||||||| || ||||||||    
T  16172985 aatcgaacctgagaccttgagaggagcacactccaaggtctcaagccaacactaccaggccaac 16173048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 34 - 193
Target Start/End: Original strand, 16247025 - 16247186
Alignment:
Q  34 ccgactaatccgaggggcccaatcccaccgtccactattttcgcatct--tttaaagccagggcaaagctctgtatggactggcctaccaaaattggcac 131  Q
    ||||||||||||||||| |||||||||||||||||| | |  | | |   |||||| |||  |||||| |||||||||||| ||| ||||| ||||||||    
T  16247025 ccgactaatccgaggggtccaatcccaccgtccact-tgtggggagcccatttaaacccaaagcaaagttctgtatggactagcccaccaagattggcac 16247123  T
Q  132 cggggta-atcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccact 193  Q
    |||||   ||  ||| |||||||||||  | |||||||| || |||| |||||||||||||||    
T  16247124 cgggggggattgaacctgagaccttgataggagcacactgcaaggtcccaagccaacaccact 16247186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 14424597 - 14424650
Alignment:
Q  161 aagcacactccatggtctcaagccaacaccactaggccaactcaaatgagttaa 214  Q
    |||||||||||| ||| |||| ||||||||||||| | ||||||||||||||||    
T  14424597 aagcacactccaaggtttcaacccaacaccactagactaactcaaatgagttaa 14424650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 23016717 - 23016762
Alignment:
Q  24 ggtctaaggaccgactaatccgaggggcccaatcccaccgtccact 69  Q
    |||||||||||| |||||||||||||| |||||| |||||||||||    
T  23016717 ggtctaaggacctactaatccgaggggtccaatctcaccgtccact 23016762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 31206421 - 31206381
Alignment:
Q  29 aaggaccgactaatccgaggggcccaatcccaccgtccact 69  Q
    |||||||||||||||||||| | ||||||||||||||||||    
T  31206421 aaggaccgactaatccgaggagtccaatcccaccgtccact 31206381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 32059459 - 32059499
Alignment:
Q  29 aaggaccgactaatccgaggggcccaatcccaccgtccact 69  Q
    |||||||||||||||||||||| |||||||||||| |||||    
T  32059459 aaggaccgactaatccgaggggaccaatcccaccgcccact 32059499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 18351777 - 18351838
Alignment:
Q  140 tcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaac 201  Q
    |||||||||||||||||||  ||||||||| || ||||||||| | ||||||| || |||||    
T  18351777 tcaaacttgagaccttgagacaagcacacttcaaggtctcaagtctacaccaccagaccaac 18351838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 86 - 170
Target Start/End: Original strand, 23330816 - 23330901
Alignment:
Q  86 aagccagggcaaagctctgtatggactggcctaccaaaattggcaccgg-ggtaatcaaacttgagaccttgagtgaagcacactc 170  Q
    ||||||| ||||||||||||||||||| ||| ||| ||||||||||||| || | || ||| |||||||||||| | |||||||||    
T  23330816 aagccagagcaaagctctgtatggacttgcccaccgaaattggcaccggagggagtcgaacctgagaccttgagaggagcacactc 23330901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 25956305 - 25956370
Alignment:
Q  149 agaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaactcaaatgagttaa 214  Q
    |||||||||| | ||||||||||| |||| |||||||| |||||||||||||| |||||| |||||    
T  25956305 agaccttgagaggagcacactccaaggtcccaagccaataccactaggccaacccaaatgggttaa 25956370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 86 - 172
Target Start/End: Complemental strand, 28647093 - 28647006
Alignment:
Q  86 aagccagggcaaagctctgtatggactggcctaccaaaattggcaccgg-ggtaatcaaacttgagaccttgagtgaagcacactcca 172  Q
    ||||||| ||||| |||||||| |||| ||| ||| ||||||||||| | || |||| ||| |||||||||||| |||||||||||||    
T  28647093 aagccagagcaaaactctgtattgacttgcccaccgaaattggcaccagagggaatcgaacctgagaccttgagagaagcacactcca 28647006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 38372999 - 38373039
Alignment:
Q  29 aaggaccgactaatccgaggggcccaatcccaccgtccact 69  Q
    |||||||||||||||| ||||| ||||||||||||||||||    
T  38372999 aaggaccgactaatccaaggggtccaatcccaccgtccact 38373039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 44628164 - 44628248
Alignment:
Q  118 accaaaattggcaccggggtaatcaaacttgagaccttga-gtgaagcacactccatggtctcaagccaacaccactaggccaac 201  Q
    |||||||||| ||||| || ||||||||||||||| |||| | | ||||||||||| |||| ||||| |||| ||| ||||||||    
T  44628164 accaaaattgacaccgagggaatcaaacttgagactttgaggaggagcacactccaaggtcccaagctaacaacaccaggccaac 44628248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 674452 - 674495
Alignment:
Q  26 tctaaggaccgactaatccgaggggcccaatcccaccgtccact 69  Q
    |||||||||||||||||| ||||||  |||||||||||||||||    
T  674452 tctaaggaccgactaatctgaggggatcaatcccaccgtccact 674495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 18847404 - 18847487
Alignment:
Q  119 ccaaaattggcaccggggt-aatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaac 201  Q
    |||||||||||||||| |  || | ||||||||| |||||| | ||||||||| | | ||||||||||||||||| ||||||||    
T  18847404 ccaaaattggcaccggagagaaacgaacttgagatcttgagaggagcacactcgaagatctcaagccaacaccaccaggccaac 18847487  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 172
Target Start/End: Complemental strand, 22696443 - 22696357
Alignment:
Q  86 aagccagggcaaagctctgtatggactggcctaccaaaattggcaccgg-ggtaatcaaacttgagaccttgagtgaagcacactcca 172  Q
    ||||||| ||||||||||||||||| |  || ||| ||||||||||| | || |||||||| |||||||||||| | |||||||||||    
T  22696443 aagccagagcaaagctctgtatggagtcccc-accgaaattggcaccagagggaatcaaacctgagaccttgagaggagcacactcca 22696357  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 213
Target Start/End: Original strand, 44146577 - 44146628
Alignment:
Q  162 agcacactccatggtctcaagccaacaccactaggccaactcaaatgagtta 213  Q
    ||||||||||| |||| ||| ||||||||||||||||||| ||| |||||||    
T  44146577 agcacactccaaggtcccaaaccaacaccactaggccaacccaagtgagtta 44146628  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 63
Target Start/End: Complemental strand, 2344481 - 2344447
Alignment:
Q  29 aaggaccgactaatccgaggggcccaatcccaccg 63  Q
    |||||||||||||||||||||| ||||||||||||    
T  2344481 aaggaccgactaatccgaggggaccaatcccaccg 2344447  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 5579218 - 5579299
Alignment:
Q  122 aaattggcaccggggtaa-tcaaacttgagaccttgagt-gaagcacactccatggtctcaagccaacaccactaggccaac 201  Q
    |||||||||||||||  | |||||| ||||||||||||  | ||||||||||| |||| |||||||||||||| ||| ||||    
T  5579218 aaattggcaccggggagagtcaaacctgagaccttgaggaggagcacactccaaggtcccaagccaacaccaccaggtcaac 5579299  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 210
Target Start/End: Original strand, 19612636 - 19612713
Alignment:
Q  133 ggggtaatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaactcaaatgag 210  Q
    ||||||||  ||| |||||||||||| | |||||||| || | || ||||||||||||||||  ||||||||| ||||    
T  19612636 ggggtaattgaacatgagaccttgagaggagcacacttcaagatcccaagccaacaccactaaaccaactcaagtgag 19612713  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 21050148 - 21050193
Alignment:
Q  144 acttgagaccttgagtgaagcacactccatggtctcaagccaacac 189  Q
    ||||||||||||||| | ||||||||||| ||||||||||| ||||    
T  21050148 acttgagaccttgagaggagcacactccaaggtctcaagcctacac 21050193  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 172
Target Start/End: Original strand, 21574179 - 21574267
Alignment:
Q  86 aagccagggcaaagctctgtatggactggcctaccaaaattggcacc--ggggtaatcaaacttgagaccttgagtgaagcacactcca 172  Q
    ||||| ||||||||||||||||||||| ||| ||| || ||||||||   ||| |||| ||| || ||||||||| | |||||||||||    
T  21574179 aagcctgggcaaagctctgtatggacttgcccaccgaagttggcaccaaaggggaatcgaacctgtgaccttgagaggagcacactcca 21574267  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 190
Target Start/End: Original strand, 6383948 - 6384056
Alignment:
Q  82 tttaaagccagggcaaagctctgtatggactggcctaccaaaattggcaccggggtaatcaaacttgagaccttgagtgaagcacactccatggtctcaa 181  Q
    ||||||||||  |||||||||| |||||||| ||| ||  ||||||||||| | |  ||  ||| |||||||||||| | ||||||||||| |||| |||    
T  6383948 tttaaagccaaagcaaagctctttatggactagcccactgaaattggcacccgagggattgaacctgagaccttgagaggagcacactccaaggtcccaa 6384047  T
Q  182 gccaacacc 190  Q
    |||||||||    
T  6384048 gccaacacc 6384056  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 6691528 - 6691615
Alignment:
Q  115 cctaccaaaattggcaccggggt-aatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaac 201  Q
    |||||| ||||||||||||| |  |||| ||| |||||||||||| | ||||||||||| ||||| ||| ||||||||| ||||||||    
T  6691528 cctaccgaaattggcaccggagagaatcgaacctgagaccttgagaggagcacactccaaggtctaaagtcaacaccaccaggccaac 6691615  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 9208376 - 9208285
Alignment:
Q  82 tttaaagccagggcaaagctctgtatggactggcctaccaaaattggcacc-ggggtaatcaaacttgagaccttgagtgaagcacactcca 172  Q
    ||||||||||  |||| |||||||||||||| ||| ||| ||||||||||| |||| |||| ||| |||||||||||| | |||| ||||||    
T  9208376 tttaaagccaaagcaaggctctgtatggacttgcccaccgaaattggcaccagggggaatcgaacctgagaccttgagaggagcaaactcca 9208285  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 24507562 - 24507612
Alignment:
Q  162 agcacactccatggtctcaagccaacaccactaggccaactcaaatgagtt 212  Q
    |||| |||||| |||| ||||||||||||||||||||||| ||||||||||    
T  24507562 agcaaactccaaggtcccaagccaacaccactaggccaacccaaatgagtt 24507612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 210
Target Start/End: Complemental strand, 3869791 - 3869698
Alignment:
Q  118 accaaaattggcaccggggt-aatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggccaactcaaatgag 210  Q
    ||||| |||||||||||||  |||| ||| |||||||||||  ||||||||||| | | ||||||||||||||||  |||||||| ||| ||||    
T  3869791 accaatattggcaccggggagaatcgaacatgagaccttgatagaagcacactcgaagatctcaagccaacaccatcaggccaacccaagtgag 3869698  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 197
Target Start/End: Original strand, 7484227 - 7484320
Alignment:
Q  105 tatggactggcctaccaaaattggcaccggggt-aatcaaacttgagaccttgagtgaagcacactccatggtctcaagccaacaccactaggc 197  Q
    |||||||| ||| ||| |||||||||||||||  |||| ||| |||||||||||| | ||||| || || ||||||||||||| ||||| ||||    
T  7484227 tatggactagcccaccgaaattggcaccggggggaatctaacgtgagaccttgagcggagcactcttcaaggtctcaagccaataccaccaggc 7484320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 17149529 - 17149620
Alignment:
Q  82 tttaaagccagggcaaagctctgtatggactggcctaccaaaattggcacc-ggggtaatcaaacttgagaccttgagtgaagcacactcca 172  Q
    ||||||||||  |||| |||||||||||||| ||| ||| ||||| ||||| | || |||| ||| |||||||||||| | |||||||||||    
T  17149529 tttaaagccaaagcaaggctctgtatggacttgccaaccgaaattagcaccagagggaatcgaacctgagaccttgagaggagcacactcca 17149620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 33560427 - 33560390
Alignment:
Q  164 cacactccatggtctcaagccaacaccactaggccaac 201  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  33560427 cacactccaaggtctcaagccaacaccactaggacaac 33560390  T

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Target: scaffold0337 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 1803 - 1753
Alignment:
Q  162 agcacactccatggtctcaagccaacaccactaggccaactcaaatgagtt 212  Q
    |||| |||||| |||| ||||||||||||||||||||||| ||||||||||    
T  1803 agcaaactccaaggtcccaagccaacaccactaggccaacccaaatgagtt 1753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 12239 - 12189
Alignment:
Q  162 agcacactccatggtctcaagccaacaccactaggccaactcaaatgagtt 212  Q
    |||| |||||| |||| ||||||||||||||||||||||| ||||||||||    
T  12239 agcaaactccaaggtcccaagccaacaccactaggccaacccaaatgagtt 12189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 66932 - 66892
Alignment:
Q  29 aaggaccgactaatccgaggggcccaatcccaccgtccact 69  Q
    |||||||||||||||||||||| |||||||||||| |||||    
T  66932 aaggaccgactaatccgaggggaccaatcccaccgcccact 66892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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