View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9055_low_32 (Length: 413)
Name: NF9055_low_32
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9055_low_32 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 17 - 373
Target Start/End: Complemental strand, 9088605 - 9088252
Alignment:
| Q |
17 |
atttgtgtcaagtacgtttaagtaacgaaacttaactgaaaataaaggtgtttgttttgaacattgattttgtggaattgtcgtacatgatgagtaataa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9088605 |
atttgtgtcaagtacgtttaagtaacgaaacttaactgaaaataaaggtgtttgttttgaacattgattttgtggaattgttgtacatgatgagtaataa |
9088506 |
T |
|
| Q |
117 |
ggtaccaccaagacctcgtactagagttgggaagtacgagatgggaaaaacaattggtgaaggaagttttgctaaggtgaagttggctaagaatgttgaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9088505 |
ggtaccaccaagacctcgtactagagttgggaagtacgagatgggaaaaacaattggtgaaggaagttttgctaaggtgaagttggctaagaatgttgaa |
9088406 |
T |
|
| Q |
217 |
aatggagattatgttgccatcaaaattcttgatcgtaatcatgtactcaaacacaatatgatggatcaggtacaattttatttgttatggattatcttat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| |||| |
|
|
| T |
9088405 |
aatggagattatgttgccatcaaaattcttgatcgtaatcatgtactcaaacacaatatgatggatcaggtacaatcttatctgttatcgattatattat |
9088306 |
T |
|
| Q |
317 |
tcgctatcagttataaattcaaattcatctgttgtgataaaattcattagttatccg |
373 |
Q |
| |
|
||| |||||||||||||||||||||| ||| |||| |||| || ||||||||| |
|
|
| T |
9088305 |
tcg---tcagttataaattcaaattcattcattgcgatagaatttatcagttatccg |
9088252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 91 - 373
Target Start/End: Complemental strand, 9079754 - 9079475
Alignment:
| Q |
91 |
gaattgtcgtacatgatgagtaataaggtaccaccaagacctcgtactagagttgggaagtacgagatgggaaaaacaattggtgaaggaagttttgcta |
190 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||| | ||| ||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9079754 |
gaattgttgtacatgatgagtaataaggtaacacaagcaccacgtactagagtagggaagtatgagctgggaaaaacaattggtgaaggaagttttgcta |
9079655 |
T |
|
| Q |
191 |
aggtgaagttggctaagaatgttgaaaatggagattatgttgccatcaaaattcttgatcgtaatcatgtactcaaacacaatatgatggatcaggtaca |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9079654 |
aggtgaagttggctaagaatgttgaaaatggagattatgttgccatcaaaattcttgatcgtaatcatgtactcaaacacaatatgatggatcaggtaca |
9079555 |
T |
|
| Q |
291 |
attttatttgttatggattatcttattcgctatcagttataaattcaaattcatctgttgtgataaaattcattagttatccg |
373 |
Q |
| |
|
|| |||| |||||| |||||| ||||||| |||||||||||||||||||||| ||| |||| |||| || ||||||||| |
|
|
| T |
9079554 |
atcttatctgttatcgattatattattcg---tcagttataaattcaaattcattcattgcgatagaatttatcagttatccg |
9079475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University