View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9055_low_35 (Length: 411)
Name: NF9055_low_35
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9055_low_35 |
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| [»] scaffold0127 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 120; Significance: 3e-61; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 23 - 285
Target Start/End: Original strand, 9720567 - 9720827
Alignment:
| Q |
23 |
acttctagttatattactgtaacagtctttaatttttacatactgtggcactcatttatttggtaatataatttgcatcgcatcatattttccctagttt |
122 |
Q |
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| T |
9720567 |
acttcttgttatattactgtaacagtctttaatttttgcatattgtgacacccgtttttttggtaatataaatagcatcgcatcatattttccctagtgt |
9720666 |
T |
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| Q |
123 |
tacgtccaaacgtatagctatagcaccaatgcgaagggttcggtagctcattcggtttagctaaggaattaaagtaattaagaagttaaagatttaggat |
222 |
Q |
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| T |
9720667 |
tacatccaaacgtatagttatcccacaattgtggagcgttctgttgcacatttggtttagctaaggaat--aagtagttaagaagttaaagatttaggat |
9720764 |
T |
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| Q |
223 |
tcaaatcttagaaagatnnnnnnnntactaacataacaactaatacactaacatttgtcattc |
285 |
Q |
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| T |
9720765 |
tcaaatcttagaaagagagaaaaataactaacataacaactaatacactaacatttatcattc |
9720827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 6802834 - 6803052
Alignment:
| Q |
18 |
cacagacttctagttatattactgtaacagtctttaatttttacatactgtggcactcatttatttggtaatataatttgcatcgcatcatattttccct |
117 |
Q |
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| T |
6802834 |
cacaaacttcttgttatattactgtaacagtctttaatttctgcatactgtgacacccttttttttggtaatataatttgaatcgcatcatattttccct |
6802933 |
T |
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| Q |
118 |
agttttacgtccaaacgtatagctatagcaccaatgcgaagggttcggtagctcattcggtttagctaaggaattaaagtaattaagaagttaaagattt |
217 |
Q |
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| T |
6802934 |
aattttacatccaaacgtatagttatctcaccattgcggagggttggatagctcacttggttaaacgaaggaatttaagaagttaagaagctaaagattt |
6803033 |
T |
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| Q |
218 |
aggattcaaatcttagaaa |
236 |
Q |
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| T |
6803034 |
aggattcaaatcttagaaa |
6803052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 7603919 - 7603777
Alignment:
| Q |
95 |
ttgcatcgcatcatattttccctagttttacgtccaaacgtatagctatagcaccaatgcgaagggttcggtagctcattcggtttagctaaggaattaa |
194 |
Q |
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| T |
7603919 |
ttgcaacgcatcacattttccgtggtcttacatccaaacatatacttatctcaccattgtggaggattgggcaactcatttggttgagctaatgaattaa |
7603820 |
T |
|
| Q |
195 |
agtaattaagaagttaaagatttaggattcaaatcttagaaag |
237 |
Q |
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| T |
7603819 |
aatagttaagaagttaaagatttaggattcaaatcttagaaag |
7603777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 342 - 395
Target Start/End: Original strand, 6803164 - 6803217
Alignment:
| Q |
342 |
tttctttactcctatattgcatccaactcagttatgaattgaaataacattttt |
395 |
Q |
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| T |
6803164 |
tttccttactcctatattgcatctaactcagttatgaattgaaataacattttt |
6803217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 342 - 395
Target Start/End: Original strand, 6753389 - 6753442
Alignment:
| Q |
342 |
tttctttactcctatattgcatccaactcagttatgaattgaaataacattttt |
395 |
Q |
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| T |
6753389 |
tttccttactcctatattgtatccaacttatttatgaattgaaataacattttt |
6753442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 395
Target Start/End: Complemental strand, 7603325 - 7603286
Alignment:
| Q |
356 |
tattgcatccaactcagttatgaattgaaataacattttt |
395 |
Q |
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| T |
7603325 |
tattgtatccaactcagttatgaattgaaataacattttt |
7603286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 394
Target Start/End: Original strand, 8537746 - 8537786
Alignment:
| Q |
354 |
tatattgcatccaactcagttatgaattgaaataacatttt |
394 |
Q |
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| T |
8537746 |
tatattccatccaattcagttatgaattgaaataacatttt |
8537786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 17229 - 17265
Alignment:
| Q |
248 |
tactaacataacaactaatacactaacatttgtcatt |
284 |
Q |
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| T |
17229 |
tactaacataacagctaacacactaacatttgtcatt |
17265 |
T |
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