View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9055_low_36 (Length: 396)
Name: NF9055_low_36
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9055_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 13 - 379
Target Start/End: Complemental strand, 40860361 - 40859995
Alignment:
| Q |
13 |
attatactttccaaacatcatcaatcttcgtggacatggcaacatccttgtccacaaccactctactttcctatagaagaaacccacaacacatgtatat |
112 |
Q |
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| T |
40860361 |
attatattttccaaacatcatcaatcttcgtggacatggcaacatccttgtccacaaccactctactttcctatagaagaaacccacaacacatgtatat |
40860262 |
T |
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| Q |
113 |
ccaaccctgttcagttaaaaatgaagtttcaagaactatgcatgcttcagtctcaatagacagtttatcaatcaatgaagagagtgataaatgttcatct |
212 |
Q |
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| T |
40860261 |
ccaaccttgttcagttaaaaatgaagtttcaagaactatgcatgcttcagtctcaatagacagtttatcaatcaatgaagagagtgataaatgttcatct |
40860162 |
T |
|
| Q |
213 |
ttgttggtaaacagaagagcaattttggcttctggagtttccttgttgggttttccaggagtgagtttggctgtggtgaaacaaggtcttttagcaggga |
312 |
Q |
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| T |
40860161 |
ttgttggcgaacagaagagcaattttggcttctggagtttccttgttgggttttccaggagtgagtttggctgtggtgaaacaaggtcttttagcaggga |
40860062 |
T |
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| Q |
313 |
gaattcctggtctgtctgagccagatgaacaaggttcgttaactttgcatcattaaagttatatttt |
379 |
Q |
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| T |
40860061 |
gaattcctggtctgtctgagccagatgaacaaggttcgttaactttgcatcattaaagttatatttt |
40859995 |
T |
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