View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9055_low_37 (Length: 354)
Name: NF9055_low_37
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9055_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 21719044 - 21718708
Alignment:
| Q |
1 |
gaatggaggatgggtttggtttagctgattctaattatctcatgattgaaggtccaagtactactcactctgatcaaagaaatgaagatgagaagttatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21719044 |
gaatggaggatgggtttggtttagctgattctaattatctcatgattgaaggtccaagtactactcactctgatcaaagaaatgaagatgagaagttatt |
21718945 |
T |
|
| Q |
101 |
agatgaggttgaaatagatgttgattatgaaagtgattcattgggcagctctgaccctaatgattctgatgaggaaaaaggtccaagatatgaaaagttt |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
21718944 |
agatagggttgaaatagatgttgattatgaaagtgattcattggccagctctgaccctgatgattctgatgaggaaaaaggtaaaagatatgaaaagttt |
21718845 |
T |
|
| Q |
201 |
aggatggaacagcttaacaagaaattcaagttcaaggttggcatggagtttaggtccctagctgagttcaaggaagcattgactgaatggaatgtaataa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
21718844 |
aggatggaacagcttaacaagaaattcaagttcaaggttggcatggagtttaggtccctagctgagttcaaggaagcatttactgagtggaatgtaataa |
21718745 |
T |
|
| Q |
301 |
atgggtgggagtttaagatggtgaaaaatgaccattt |
337 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||| |
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| T |
21718744 |
atgggtgggagtttaagatggtgaaaaatgatcattt |
21718708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 6 - 332
Target Start/End: Original strand, 20652723 - 20653049
Alignment:
| Q |
6 |
gaggatgggtttggtttagctgattctaattatctcatgattgaaggtccaagtactactcactctgatcaaagaaatgaagatgagaagttattagatg |
105 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| |
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| T |
20652723 |
gaggatgggtttggtttagctgattctaataatctcatgattgaaggtccaagtactactcaccctgatacaagaaatgaagatgaagtgttattagatg |
20652822 |
T |
|
| Q |
106 |
aggttgaaatagatgttgattatgaaagtgattcattgggcagctctgaccctaatgattctgatgaggaaaaaggtccaagatatgaaaagtttaggat |
205 |
Q |
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||||||||||||||||||||||||| |||||| | ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20652823 |
gtgttgaaatagatgttgattatgaaactgattcccttggcagctctaaccctgatgattctgatgaggaaaaaggtccaagatatgaaaagtttaggat |
20652922 |
T |
|
| Q |
206 |
ggaacagcttaacaagaaattcaagttcaaggttggcatggagtttaggtccctagctgagttcaaggaagcattgactgaatggaatgtaataaatggg |
305 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||| || | ||||| ||||||||| |||||||| |
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| T |
20652923 |
ggaacagcttaacaaaaaattcaagttcaaggttggcatggagtttaagtccctagatgagttcaaggatgcccttactgagtggaatgtattaaatggg |
20653022 |
T |
|
| Q |
306 |
tgggagtttaagatggtgaaaaatgac |
332 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
20653023 |
tgggagtttaagatggtgaaaaatgac |
20653049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 127 - 337
Target Start/End: Complemental strand, 17130940 - 17130730
Alignment:
| Q |
127 |
atgaaagtgattcattgggcagctctgaccctaatgattctgatgaggaaaaaggtccaagatatgaaaagtttaggatggaacagcttaacaagaaatt |
226 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17130940 |
atgaaagtgattcattggccagctctgaccctgatgattctgatgaggaaaaaggtccaagatatgaaaagtttaggatggaacagcttaacaagaaatt |
17130841 |
T |
|
| Q |
227 |
caagttcaaggttggcatggagtttaggtccctagctgagttcaaggaagcattgactgaatggaatgtaataaatgggtgggagtttaagatggtgaaa |
326 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
17130840 |
caagttcaaggttggcatggagtttaggtccctagctgagttcaaggaagcatttactgagtggaatgtaataaatgggtgggagtttaagatggtgaaa |
17130741 |
T |
|
| Q |
327 |
aatgaccattt |
337 |
Q |
| |
|
||||| ||||| |
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|
| T |
17130740 |
aatgatcattt |
17130730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 17131021 - 17130936
Alignment:
| Q |
1 |
gaatggaggatgggtttggtttagctgattctaattatctcatgattgaaggtccaagtactactcactctgatcaaagaaatgaa |
86 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17131021 |
gaatggaggatgggtttggtttagctgattctaattatctcatgattgaaggtccaagtactactcgctctgatcaaagaaatgaa |
17130936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 202
Target Start/End: Complemental strand, 1380708 - 1380603
Alignment:
| Q |
97 |
tattagatgaggttgaaatagatgttgattatgaaagtgattcattgggcagctctgaccctaatgattctgatgaggaaaaaggtccaagatatgaaaa |
196 |
Q |
| |
|
|||||||||| ||| |||| |||| |||||||||||||||| ||||| ||| ||||||| ||||||||||| ||| |||||||| | |||||||| |
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|
| T |
1380708 |
tattagatgatgttcaaattgatggtgattatgaaagtgatgagttgggtagcagtgaccctgatgattctgatagggagaaaggtcctaaatatgaaag |
1380609 |
T |
|
| Q |
197 |
gtttag |
202 |
Q |
| |
|
|||||| |
|
|
| T |
1380608 |
gtttag |
1380603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 202
Target Start/End: Original strand, 17322405 - 17322490
Alignment:
| Q |
117 |
gatgttgattatgaaagtgattcattgggcagctctgaccctaatgattctgatgaggaaaaaggtccaagatatgaaaagtttag |
202 |
Q |
| |
|
|||| |||||||||||||||| ||||| ||| ||||||| ||||||||||| ||| |||||||| | ||||||||||||||| |
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| T |
17322405 |
gatggtgattatgaaagtgatgagttgggtagcagtgaccctgatgattctgatagggagaaaggtcctaaatatgaaaagtttag |
17322490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 14799743 - 14799691
Alignment:
| Q |
140 |
attgggcagctctgaccctaatgattctgatgaggaaaaaggtccaagatatg |
192 |
Q |
| |
|
|||||| |||||||||||| ||| ||| ||||| ||||||||||||| ||||| |
|
|
| T |
14799743 |
attgggaagctctgaccctgatgcttcagatgatgaaaaaggtccaaaatatg |
14799691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 15246735 - 15246683
Alignment:
| Q |
140 |
attgggcagctctgaccctaatgattctgatgaggaaaaaggtccaagatatg |
192 |
Q |
| |
|
|||||| |||||||||||| ||| ||| ||||| ||||||||||||| ||||| |
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|
| T |
15246735 |
attgggaagctctgaccctgatgcttcagatgatgaaaaaggtccaaaatatg |
15246683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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