View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9055_low_4 (Length: 694)
Name: NF9055_low_4
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9055_low_4 |
 | |
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| [»] scaffold0037 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 589; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 1 - 678
Target Start/End: Original strand, 44878473 - 44879153
Alignment:
| Q |
1 |
atcaccaacatcttggcaacacgagctacttgatcatgtgcaagcactgtcactgcactgatcggaatcttagttcctacattactttgatatgcttata |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44878473 |
atcaccaacatcttggcaacacgagctacttgatcatgtgcaagcactgtcactgcactgatcggaatcttagttcctacattactttgatatgcttata |
44878572 |
T |
|
| Q |
101 |
ttgctcaccaccactcccagtagatggcttagttcatcaactgctacactcgttccannnnnnncttcgtttaatgaaccttaaaatatgttttcttttg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
44878573 |
ttgctcaccaccactcccagtagatggcttagttcatcaactgctacactcgttccatttttttcttcgtttaatgaaccttaaaatatgttttcttttg |
44878672 |
T |
|
| Q |
201 |
cgttaatctggtccttttaatttttccatctcatccatcattcatcccgttttgcctaagatctcagttactttaaactcgctccggggtgggacaaaca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
44878673 |
cgttaatctggtccttttaatttttccatctcatccatcattcatcccgttttgcctaagctctcagttactttaaactcactccggggtgggacaaaca |
44878772 |
T |
|
| Q |
301 |
aactggaacattgtatctccctaagagttgtcctctgcaggctattcatgtacagggtgacacaaagttcttaaagaatattgcatactttgtagcatgc |
400 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44878773 |
aactggaacattgtatcttcctaagagttgtcctctgcaggctattcatgtacagggtgacacaaagttcttaaagaatattgcatactttgtagcatgc |
44878872 |
T |
|
| Q |
401 |
aaacaacttcataagattggagctttgacagataatcttgttccttctatcgtcgtcgaagaagcagacgtggaggaattaggtaacttcatgccttcta |
500 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
44878873 |
aaacaacttcataagattggagctttgacatataatcttgttccttctatcgtcgttgaagaaacagacgtggaggaattaggtaacttcatgccttcta |
44878972 |
T |
|
| Q |
501 |
ttcattttattattattac---tcannnnnnnaattacttgaatgtaaaattctatttaagcgtatactacgtctatgaatggcatcgatatcaaacgaa |
597 |
Q |
| |
|
||||||||||||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
44878973 |
ttcattttattattattacctttcaattttttaattaatggaatgtaaaattctatttaagcgtatactacgtttatgaatggcatcgatatcaaacgaa |
44879072 |
T |
|
| Q |
598 |
atcttacagggaatgaaccatatatgatgaggagcaaccaagttatgtaccaatttttggatcaagcttgtatctagtttc |
678 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44879073 |
atcttacagggaatgaaccatatatgatgaggagcaaccaagttatgtaccaatttttggatcaagcttgtatctagtttc |
44879153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 348 - 485
Target Start/End: Complemental strand, 44879524 - 44879387
Alignment:
| Q |
348 |
atgtacagggtgacacaaagttcttaaagaatattgcatactttgtagcatgcaaacaacttcataagattggagctttgacagataatcttgttccttc |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||| ||| ||||| |||||||||||||||||| |
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| T |
44879524 |
atgtacagggtgacacaaagttcttaaagaatattgcatgctttgtagcttgcaaacaaattcataagatttgagatttgagagataatcttgttccttc |
44879425 |
T |
|
| Q |
448 |
tatcgtcgtcgaagaagcagacgtggaggaattaggta |
485 |
Q |
| |
|
| | ||||| |||| |||||||| ||||||||| |||| |
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| T |
44879424 |
tgtagtcgttgaagcagcagacgcggaggaatttggta |
44879387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 170 - 253
Target Start/End: Complemental strand, 44879691 - 44879608
Alignment:
| Q |
170 |
tttaatgaaccttaaaatatgttttcttttgcgttaatctggtccttttaatttttccatctcatccatcattcatcccgtttt |
253 |
Q |
| |
|
|||||||||||||| |||||||||||||| | ||||| |||| |||||||| ||| ||||| | ||||||||||||| |||| |
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|
| T |
44879691 |
tttaatgaaccttatgatatgttttcttttccattaatttggttcttttaatatttttatctcgttcatcattcatcccttttt |
44879608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 172; Significance: 5e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 168 - 648
Target Start/End: Original strand, 29677386 - 29677868
Alignment:
| Q |
168 |
cgtttaatgaaccttaaaatatgttttcttttgcgttaatctggtccttttaatt----tttccatctcatccatcattcatcccgttttgcctaagatc |
263 |
Q |
| |
|
|||||||||| |||||| || ||||||||||||| |||||||| ||||||||| ||| ||||| | ||||||||||||| ||||| |||| || |
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| T |
29677386 |
cgtttaatgagccttaagatctgttttcttttgcattaatctgatccttttaaaaaaaattt--atctcgttcatcattcatcccattttgtctaaactc |
29677483 |
T |
|
| Q |
264 |
tcagttactttaaactcgctccggggtgggacaaacaaactggaacattgtatctccctaagagttgtcctctgcaggctattcatgtacagggtgacac |
363 |
Q |
| |
|
||| |||||||||| |||| ||||||||||||| |||||||| |||||||| ||||||||||||||||| ||||||||| ||||||| |||||| | |
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|
| T |
29677484 |
ccaggtactttaaaccgactccaaggtgggacaaacagactggaacgttgtatcttcctaagagttgtcctctacaggctattaatgtacatggtgactc |
29677583 |
T |
|
| Q |
364 |
aaagttcttaaagaatattgcatactttgtagcatgcaaacaacttcataagattggagctttgacagataatcttgttccttctatcgtcgtcgaagaa |
463 |
Q |
| |
|
|||||||||||| ||||| |||| ||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| || | |||||| |
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|
| T |
29677584 |
aaagttcttaaaaaatatcgcatgtcttgaagcatgcaaaaaacttcatatgattggagctttgacagataatcttgttccttctatagttgctgaagaa |
29677683 |
T |
|
| Q |
464 |
gcagacgtggaggaattaggtaacttcatgccttctattcattttattattatt--actcannnnnnna--attacttgaatgtaaaattctatttaagc |
559 |
Q |
| |
|
||||| |||||||| || |||||||||||||||||||||||||||||||||||| | | | | || | ||||||||| ||||||||||| | |
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|
| T |
29677684 |
gcagaggtggaggactttggtaacttcatgccttctattcattttattattattgcatttaaatttttaatatcatgtgaatgtaagattctatttaacc |
29677783 |
T |
|
| Q |
560 |
gtatactacgtctatgaatggcatcgatatcaaacgaaatcttacagggaatgaaccatatatgatgaggagcaaccaagttatgtacc |
648 |
Q |
| |
|
||||||| ||||||||||||||||| || |||| ||||||| |||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
29677784 |
atatactaattctatgaatggcatcgacattaaac--aatcttatagggaatgaacc--atatgatgaggaacaaccaagttatgtacc |
29677868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 5e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 168 - 648
Target Start/End: Original strand, 26458584 - 26459081
Alignment:
| Q |
168 |
cgtttaatgaaccttaaaatatgttttcttttgcgttaatctggtccttttaatt----tttccatctcatccatcattcatcccgttttgcctaagatc |
263 |
Q |
| |
|
|||||||||| |||||| || ||||||||||||| |||||||| ||||||||| ||| ||||| | ||||||||||||| ||||| |||| || |
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|
| T |
26458584 |
cgtttaatgagccttaagatctgttttcttttgcattaatctgatccttttaaaaaaaattt--atctcgttcatcattcatcccattttgtctaaactc |
26458681 |
T |
|
| Q |
264 |
tcagttactttaaactcgctccggggtgggacaaacaaactggaacattgtatctccctaagagttgtcctctgcagg------ctattcatgtacaggg |
357 |
Q |
| |
|
||| |||||||||| |||| ||||||||||||| |||||||| |||||||| ||||||||||||||||| || | || || ||||||| || |
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| T |
26458682 |
ccaggtactttaaaccgactccaaggtgggacaaacagactggaacgttgtatcttcctaagagttgtcctctacaagtacaagctgttaatgtacatgg |
26458781 |
T |
|
| Q |
358 |
tgacacaaagttcttaaagaatattgcatactttgtagcatgcaaacaacttcataagattggagctttgacagataatcttgttccttctatcgtcgtc |
457 |
Q |
| |
|
||| |||||| |||||| |||||||||| ||| ||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
26458782 |
tgaatcaaagtacttaaaaaatattgcatgtcttgaagcatgcaaacgacttcatatgattggagctttgacagataatctcgttccttctatagtcgtt |
26458881 |
T |
|
| Q |
458 |
gaagaagcagacgtggaggaattaggtaacttcatgccttcta-------ttcattttattattattac--tcannnnnnna--attacttgaatgtaaa |
546 |
Q |
| |
|
||| ||||||| |||||||| || ||||||||||||||||||| ||||||||||||||||| | | | | ||||| ||||||||| |
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|
| T |
26458882 |
gaaaaagcagaggtggaggactttggtaacttcatgccttctattcatttttcattttattattattgcctttaaatttttaatattacgtgaatgtaag |
26458981 |
T |
|
| Q |
547 |
attctatttaagcgtatactacgtctatgaatggcatcgatatcaaacgaaatcttacagggaatgaaccatatatgatgaggagcaaccaagttatgta |
646 |
Q |
| |
|
|||||||||| | ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| |||||| ||||| ||||||||||| ||| |
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|
| T |
26458982 |
tttctatttaaccatatactaattctatgaatggcatcgacatcaaacaaaatcttacagggaatgaacc--atatgacgaggatcaaccaagttacgta |
26459079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 3e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 289 - 620
Target Start/End: Complemental strand, 11491904 - 11491566
Alignment:
| Q |
289 |
gtgggacaaacaaactggaacattgtatctccctaagagttgtcctctgcaggctattcatgtacagggtgacacaaagttcttaaagaatattgcatac |
388 |
Q |
| |
|
|||||||||||| | |||| ||||||||| |||||||||||||| | || |||||||||||||| ||||||| || ||||||||||||||||||| | |
|
|
| T |
11491904 |
gtgggacaaacataaaggaatattgtatcttcctaagagttgtcccatacatgctattcatgtacaaggtgacaataaattcttaaagaatattgcatgc |
11491805 |
T |
|
| Q |
389 |
tttgtagcatgcaaacaacttcataagattggagctttgacagataatcttgttccttctatcgtcgtcgaagaagcagacgtggaggaattaggtaac- |
487 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| || || ||||||||||| ||||||||||| |||||| |
|
|
| T |
11491804 |
cttgaagcatgcaaacaactacataagattggagcgttgacagataatctcgttccttctattgttgttgaagaagcagaggtggaggaattcggtaact |
11491705 |
T |
|
| Q |
488 |
-ttcatgccttctattcattt---tattattattac---tcannnnnnnaattacttgaatgtaaaattctatttaagcgtatactacgtctatgaatgg |
580 |
Q |
| |
|
|| |||||||||||||||| | |||||||| | ||| | |||||||||||| |||||||||||| | |||| | ||| ||||||| |
|
|
| T |
11491704 |
ttttgtgccttctattcattttgattttattattgcctttcatttttcacactacttgaatgtagaattctatttaaccatata-aaattctctgaatgg |
11491606 |
T |
|
| Q |
581 |
catcgatatcaaacgaaatcttacagggaatgaaccatat |
620 |
Q |
| |
|
||| || ||||||| ||||||||||||||||||||||||| |
|
|
| T |
11491605 |
cattgacatcaaacaaaatcttacagggaatgaaccatat |
11491566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 348 - 448
Target Start/End: Complemental strand, 306 - 206
Alignment:
| Q |
348 |
atgtacagggtgacacaaagttcttaaagaatattgcatactttgtagcatgcaaacaacttcataagattggagctttgacagataatcttgttccttc |
447 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
306 |
atgtacaggctgacacaaagttcttaaagaatattgcatgctttgtagcttgcaaacaaattcataagattggaggtttgagagataatcttgttccttc |
207 |
T |
|
| Q |
448 |
t |
448 |
Q |
| |
|
| |
|
|
| T |
206 |
t |
206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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