View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9055_low_40 (Length: 346)
Name: NF9055_low_40
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9055_low_40 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 14 - 328
Target Start/End: Original strand, 44055568 - 44055882
Alignment:
| Q |
14 |
gtgttcatgagtaagccaagggtagcaccttcgcgaatcggcatttgataatagattgcaacagctagagttccaacaattttgccaatgcaagcaagaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44055568 |
gtgttcatgagtaagccaagggtagcaccttcacgaatcggcattcgataatagattgcaacagctagagttccaacaattttgccaatgcaagcaagaa |
44055667 |
T |
|
| Q |
114 |
aaatgacaagaataagaataacccaggtaaaagaccctttaatgagtcctatattggtttttaacccactaatggcaaaaaagagaggtaacaaaagtcc |
213 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44055668 |
aaatgacaagaataagaataacccaagtaaaagaccctttaatgagtcctatattggtttttaacccactaatggcaaaaaagagaggtaacaaaagtcc |
44055767 |
T |
|
| Q |
214 |
tgaaacaaaatcctcaagcttttctaccagagaaacaccaagcggtccattcggaattgccaaaccgaacacaaaagctccgaaaacagaatgagttcca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44055768 |
tgaaacaaaatcctcaagcttttctaccagagaaacaccaagcggtccattcggaattgccaaaccgaacacaaaagctccgaaaacagaatgagttcca |
44055867 |
T |
|
| Q |
314 |
atagcatcagtgatg |
328 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
44055868 |
atagcatcagtgatg |
44055882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 179 - 328
Target Start/End: Original strand, 39237605 - 39237754
Alignment:
| Q |
179 |
ccactaatggcaaaaaagagaggtaacaaaagtcctgaaacaaaatcctcaagcttttctaccagagaaacaccaagcggtccattcggaattgccaaac |
278 |
Q |
| |
|
|||||||| |||||||||||||| | ||||||||| |||||||| |||||||||||||| | |||| || |||||| |||||| | ||||| ||||| |
|
|
| T |
39237605 |
ccactaattgcaaaaaagagaggaagcaaaagtccagaaacaaagtcctcaagcttttcaataagagcaaaaccaagtggtccagttggaataatcaaac |
39237704 |
T |
|
| Q |
279 |
cgaacacaaaagctccgaaaacagaatgagttccaatagcatcagtgatg |
328 |
Q |
| |
|
| |||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
39237705 |
caaacacaaaagctccaaaaacagaatgagttccaatagcatctgtgatg |
39237754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University