View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9055_low_43 (Length: 313)

Name: NF9055_low_43
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9055_low_43
NF9055_low_43
[»] chr5 (4 HSPs)
chr5 (218-295)||(39675407-39675486)
chr5 (104-195)||(39675263-39675353)
chr5 (217-270)||(10865768-10865823)
chr5 (54-86)||(39675213-39675245)


Alignment Details
Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 218 - 295
Target Start/End: Original strand, 39675407 - 39675486
Alignment:
Q  218 agtcaagtaaaggcttcttgtgatgatgtg--atgttagcatctccacaaaatatattatcttgacattactacaatatt 295  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39675407 agtcaagtaaaggcttcttgtgatgatgtgtgatgttagcatctccacaaaatatattatcttgacattactacaatatt 39675486  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 104 - 195
Target Start/End: Original strand, 39675263 - 39675353
Alignment:
Q  104 ttacgttcaacgaattatttaaaactttgtttctttcaaatttgnnnnnnnnaataacactagttttttaaaacttaattagtctgtgcaca 195  Q
    |||||||||| |||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||    
T  39675263 ttacgttcaatgaattatttaaaactttgtttctttcaaatttgtttttttt-ataacactagttttttaaaacttaattagtctgtgcaca 39675353  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 10865768 - 10865823
Alignment:
Q  217 tagtcaagtaaaggcttcttgtgatgatgtgatgttagca--tctccacaaaatat 270  Q
    ||||||| ||||||||||| |||||||||| |||||||||  ||||||||||||||    
T  10865768 tagtcaaataaaggcttctagtgatgatgtaatgttagcatctctccacaaaatat 10865823  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 86
Target Start/End: Original strand, 39675213 - 39675245
Alignment:
Q  54 ctccatcatttaaaacgttagtcgctaagtttg 86  Q
    |||||||||||||||||||||||||||| ||||    
T  39675213 ctccatcatttaaaacgttagtcgctaattttg 39675245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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