View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9055_low_45 (Length: 303)
Name: NF9055_low_45
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9055_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 284
Target Start/End: Complemental strand, 38287595 - 38287321
Alignment:
| Q |
11 |
tagattattcttgcctgatgaccgaacctctttttcctgagaaaccagagggttaacacnnnnnnntattgcattcttaatttacgagtatattttctcc |
110 |
Q |
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| T |
38287595 |
tagattatccttgtctgatgaccgaacctcttttttctgagaaaccagagggttaacacaaaaaa-tattgcattcttaatttacgagtatattttctcc |
38287497 |
T |
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| Q |
111 |
tgacatgaatgtgtgtgtatttgtgtgtctatatatgtattaaggaaaatggaaaagggtagagtagtaccactcctatacaatttggaaccagtacaaa |
210 |
Q |
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|| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38287496 |
tg-catgaatgtgtgtttatttgtgtgtctatatacgtattaaggaaaatggaaaagggtagagtagtaccactcctatacaatttggaaccagtacaaa |
38287398 |
T |
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| Q |
211 |
gtgatatcatacgcacagac---nnnnnnnnggaaagccaaatcccatatctaagcaataatcaaccgggttcacat |
284 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38287397 |
gtgatatcatacgcacagacaaaaaaaaaaaggaaagccaaatcccatatctaagcaataatcaaccgggttcacat |
38287321 |
T |
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