View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9055_low_47 (Length: 292)

Name: NF9055_low_47
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9055_low_47
NF9055_low_47
[»] chr2 (2 HSPs)
chr2 (112-279)||(16384804-16384969)
chr2 (1-105)||(16385119-16385223)
[»] chr4 (1 HSPs)
chr4 (46-129)||(8321554-8321636)
[»] chr1 (3 HSPs)
chr1 (75-180)||(26330435-26330541)
chr1 (54-126)||(17622013-17622085)
chr1 (48-125)||(26645958-26646035)
[»] scaffold0021 (1 HSPs)
scaffold0021 (48-151)||(156500-156604)
[»] chr3 (1 HSPs)
chr3 (53-157)||(21806652-21806757)
[»] chr7 (1 HSPs)
chr7 (100-187)||(5487433-5487520)
[»] chr5 (1 HSPs)
chr5 (48-122)||(33699845-33699919)


Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 112 - 279
Target Start/End: Complemental strand, 16384969 - 16384804
Alignment:
Q  112 caaaacttgtatggtcaatagaccaataaaagaagagaaaagagtgtagaggttgagagggtatctcaaagaaccaatttgaaaaatgtctcacaatttt 211  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||     
T  16384969 caaaacttgtatggttaatagagcaataaaagaagagaaaagagtgtagaggttgagagggtatctcaaagaaccaagttgaaaaatgtgtcacaatttg 16384870  T
Q  212 taggtttcgatttcgtacactggcttactagattgtgttggtggtacatgtttgtgcactttctgtct 279  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16384869 taggtttcgatttcgt--actggcttactagattgtgttggtggtacatgtttgtgcactttctgtct 16384804  T

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Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 16385223 - 16385119
Alignment:
Q  1 tcacgatctattttatgtgttgctgtctggattttcactttctatgtttcattaatcatctttaggttataaaagtggattgtgtgatagctaaagtccg 100  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||    
T  16385223 tcacgatctattttatgtgttgctttctggattttcgctttctatgtttcattaatcatcgttaggttataaaagtagattgtgtgataactaaagtccg 16385124  T
Q  101 aagag 105  Q
    |||||    
T  16385123 aagag 16385119  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 8321636 - 8321554
Alignment:
Q  46 gtttcattaatcatctttaggttataaaagtggattgtgtgatagctaaagtccgaagaggctttccaaaacttgtatggtcaa 129  Q
    ||||||||||| |||||||||| ||||| ||||||||| ||||||||||||||  |||||| | ||||||||||||| ||||||    
T  8321636 gtttcattaattatctttaggt-ataaaggtggattgtatgatagctaaagtctaaagaggttgtccaaaacttgtaaggtcaa 8321554  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 180
Target Start/End: Complemental strand, 26330541 - 26330435
Alignment:
Q  75 gtggattgtgtgatagctaaagtccgaagaggctttccaaaacttgtatggtcaa-tagaccaataaaagaagagaaaagagtgtagaggttgagagggt 173  Q
    |||||||||||| | | ||||||| ||||||| | ||||||||||||| | |||| || ||| | ||||||||||| ||||||||||   ||||||||||    
T  26330541 gtggattgtgtggttgttaaagtctgaagaggttgtccaaaacttgtaagatcaaataaaccgagaaaagaagagagaagagtgtagtatttgagagggt 26330442  T
Q  174 atctcaa 180  Q
    |||||||    
T  26330441 atctcaa 26330435  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 126
Target Start/End: Original strand, 17622013 - 17622085
Alignment:
Q  54 aatcatctttaggttataaaagtggattgtgtgatagctaaagtccgaagaggctttccaaaacttgtatggt 126  Q
    |||| |||||| | |||||| |||||||||||| || |||||||||||| |||||   |||||||||||||||    
T  17622013 aatcctctttatgctataaaggtggattgtgtggtaactaaagtccgaaaaggctgctcaaaacttgtatggt 17622085  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 26645958 - 26646035
Alignment:
Q  48 ttcattaatcatctttaggttataaaagtggattgtgtgatagctaaagtccgaagaggctttccaaaacttgtatgg 125  Q
    |||| ||||| |||||  |||||||| |||||||||||| ||| ||||||| ||||||  | || |||||||||||||    
T  26645958 ttcactaatcttctttgagttataaaggtggattgtgtggtagttaaagtctgaagagcatgtctaaaacttgtatgg 26646035  T

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Target: scaffold0021 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 151
Target Start/End: Original strand, 156500 - 156604
Alignment:
Q  48 ttcattaatcatctttaggttataaaagtggattgtgtgatagc-taaagtccgaagaggctttccaaaacttgtatggtcaa-tagaccaataaaagaa 145  Q
    |||||||||| | ||||||||||||| || |||||| || |||| ||||||| ||| ||||| |||||||||| |||||| || |||||| | |||||||    
T  156500 ttcattaatcctttttaggttataaaggttgattgtatggtagcttaaagtctgaataggctgtccaaaacttatatggttaagtagacc-agaaaagaa 156598  T
Q  146 gagaaa 151  Q
    ||||||    
T  156599 gagaaa 156604  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 21806652 - 21806757
Alignment:
Q  53 taatcatctttaggttataaaagtggattgtgtgatagctaaagtccgaagaggctttccaaaacttgtatggtcaa-tagaccaataaaagaagagaaa 151  Q
    ||||| |||||||| |||||| |||||| ||||| ||||||||||  |||||| || |||||||||||| |||  || | |||||  |||||||||||||    
T  21806652 taatcttctttagggtataaaggtggatcgtgtggtagctaaagtttgaagagactgtccaaaacttgtgtggcaaagtggaccataaaaagaagagaaa 21806751  T
Q  152 agagtg 157  Q
    | ||||    
T  21806752 atagtg 21806757  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 5487433 - 5487520
Alignment:
Q  100 gaagaggctttccaaaacttgtatggtcaa-tagaccaataaaagaagagaaaagagtgtagaggttgagagggtatctcaaagaacca 187  Q
    ||||||| | ||||||||| |||| ||||| ||| |||| |||||||||||||| |||| ||| |||||| ||||||||||||| ||||    
T  5487433 gaagaggttgtccaaaactcgtattgtcaagtaggccaagaaaagaagagaaaa-agtgcagaagttgagtgggtatctcaaagcacca 5487520  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 122
Target Start/End: Complemental strand, 33699919 - 33699845
Alignment:
Q  48 ttcattaatcatctttaggttataaaagtggattgtgtgatagctaaagtccgaagaggctttccaaaacttgta 122  Q
    |||| ||||| |||||||| |||||| |||||||||||   |||||||||| |||||||||  |||||| |||||    
T  33699919 ttcactaatcctctttagggtataaaggtggattgtgtagcagctaaagtctgaagaggctgcccaaaatttgta 33699845  T

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