View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9055_low_49 (Length: 289)

Name: NF9055_low_49
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9055_low_49
NF9055_low_49
[»] scaffold0376 (1 HSPs)
scaffold0376 (16-274)||(1290-1548)
[»] chr4 (1 HSPs)
chr4 (115-274)||(550211-550370)
[»] chr5 (2 HSPs)
chr5 (115-274)||(11768846-11769005)
chr5 (121-248)||(11769448-11769574)
[»] chr1 (3 HSPs)
chr1 (126-246)||(24848475-24848595)
chr1 (115-164)||(23602440-23602489)
chr1 (115-165)||(21791483-21791532)
[»] chr7 (3 HSPs)
chr7 (134-270)||(43065210-43065347)
chr7 (115-222)||(43065773-43065879)
chr7 (117-162)||(4962374-4962419)
[»] chr8 (2 HSPs)
chr8 (117-248)||(10092926-10093056)
chr8 (117-241)||(10093457-10093580)
[»] chr3 (3 HSPs)
chr3 (117-248)||(54584236-54584366)
chr3 (115-245)||(54584801-54584930)
chr3 (115-162)||(22259568-22259615)
[»] chr6 (1 HSPs)
chr6 (115-248)||(19820785-19820917)
[»] chr2 (2 HSPs)
chr2 (115-206)||(31396405-31396496)
chr2 (115-164)||(38273556-38273604)


Alignment Details
Target: scaffold0376 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 274
Target Start/End: Complemental strand, 1548 - 1290
Alignment:
Q  16 gggattagggtttccttcccaacttcactaattttatatttataacattgcagctaagcccaccgataaaaatttggtatgggcctaacttaacacgcaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1548 gggattagggtttccttcccaacttcactaattttatatttataacattgcagctgagcccaccgataaaaatttggtatgggcctaacttaacacgcaa 1449  T
Q  116 ggatcaaataacaccatggtgtcaaactaaattttgacatcaaatcttaatcatctattgtaattcaatctaaggctataaattatttggtttatatgct 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1448 ggatcaaataacaccatggtgtcaaactaaattttgacatcaaatcttaatcatctattgtaattcaatctaaggctataaattatttggtttatatgct 1349  T
Q  216 ctctatttccttttttggagaagcaaaacaaatttttatttacttatttccagatcaca 274  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1348 ctctatttccttttttggagaagcaaaacaaatttttatttatttatttccagatcaca 1290  T

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Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 115 - 274
Target Start/End: Complemental strand, 550370 - 550211
Alignment:
Q  115 aggatcaaataacaccatggtgtcaaactaaattttgacatcaaatcttaatcatctattgtaattcaatctaaggctataaattatttggtttatatgc 214  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||    
T  550370 aggatcaaatgacaccatggtgtcaaactaaattttgacatcaaatcttaaccatctattataattcaatctaaggctataaattatttgatttatatgc 550271  T
Q  215 tctctatttccttttttggagaagcaaaacaaatttttatttacttatttccagatcaca 274  Q
    ||||||||||||||||||||||||||||||||| | || |||| ||||| || |||||||    
T  550270 tctctatttccttttttggagaagcaaaacaaaatcttttttatttattaccggatcaca 550211  T

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Target: chr5 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 115 - 274
Target Start/End: Original strand, 11768846 - 11769005
Alignment:
Q  115 aggatcaaataacaccatggtgtcaaactaaattttgacatcaaatcttaatcatctattgtaattcaatctaaggctataaattatttggtttatatgc 214  Q
    |||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11768846 aggatcaaatgacatcatggtgtcaaactaaattttgacaccaaatcttaatcatttattgtaattcaatctaaggctataaattatttggtttatatgc 11768945  T
Q  215 tctctatttccttttttggagaagcaaaacaaatttttatttacttatttccagatcaca 274  Q
    |||||||||||||||||||||||| |||||||| | || |||| ||||| ||| ||||||    
T  11768946 tctctatttccttttttggagaagtaaaacaaaatcttttttatttattaccatatcaca 11769005  T

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Target: chr5; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 121 - 248
Target Start/End: Complemental strand, 11769574 - 11769448
Alignment:
Q  121 aaataacaccatggtgtcaaactaaattttgacatcaaatcttaatcatctattgtaattcaatctaaggctataaattatttggtttatatgctctcta 220  Q
    |||| ||||||||||||||||||||||||  |||  ||||||||| |||||||| ||||| ||||||||| || |||||| ||||| |||||||||||||    
T  11769574 aaatgacaccatggtgtcaaactaaattta-acactaaatcttaaccatctattttaattaaatctaaggttagaaattacttggtctatatgctctcta 11769476  T
Q  221 tttccttttttggagaagcaaaacaaat 248  Q
    ||||||||||| ||||||||||||||||    
T  11769475 tttcctttttttgagaagcaaaacaaat 11769448  T

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Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 126 - 246
Target Start/End: Complemental strand, 24848595 - 24848475
Alignment:
Q  126 acaccatggtgtcaaactaaattttgacatcaaatcttaatcatctattgtaattcaatctaaggctataaattatttggtttatatgctctctatttcc 225  Q
    ||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  24848595 acaccatggtgccaaactaaattttgacaccaaatcttaaccatctattgtaattcaatctaagcctagaaattatttggtttatatgctctctatttcc 24848496  T
Q  226 ttttttggagaagcaaaacaa 246  Q
    |||||||||||||||||||||    
T  24848495 ttttttggagaagcaaaacaa 24848475  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 23602489 - 23602440
Alignment:
Q  115 aggatcaaataacaccatggtgtcaaactaaattttgacatcaaatctta 164  Q
    |||||||||| |||||||||||||||||||| |||||||| |||||||||    
T  23602489 aggatcaaatgacaccatggtgtcaaactaatttttgacaccaaatctta 23602440  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 21791532 - 21791483
Alignment:
Q  115 aggatcaaataacaccatggtgtcaaactaaattttgacatcaaatcttaa 165  Q
    |||||||||| |||||||||||||||| |||| ||||||| ||||||||||    
T  21791532 aggatcaaatgacaccatggtgtcaaattaaa-tttgacaccaaatcttaa 21791483  T

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Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 134 - 270
Target Start/End: Original strand, 43065210 - 43065347
Alignment:
Q  134 gtgtcaaactaaattttgacatcaaatcttaatcatctattgtaattcaatctaaggctataaattatttggtttatatgctctctatttcc-ttttttg 232  Q
    |||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  43065210 gtgtcaaactaaattttgacacaaaatcttaaccatctattgtaattcaatctaaggctagaaattatttggtttatatgctctctatttcctttttttg 43065309  T
Q  233 gagaagcaaaacaaatttttatttacttatttccagat 270  Q
    ||||||||||||||| | || |||| ||||| ||||||    
T  43065310 gagaagcaaaacaaaatcttttttatttattaccagat 43065347  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 43065879 - 43065773
Alignment:
Q  115 aggatcaaataacaccatggtgtcaaactaaattttgacatcaaatcttaatcatctattgtaattcaatctaaggctataaattatttggtttatatgc 214  Q
    |||||||||| |||||||| ||||||||||||||| |||| |||||||||| |||||||| ||||| ||||||||| || |||||| ||||| |||||||    
T  43065879 aggatcaaatgacaccatgatgtcaaactaaattt-gacaccaaatcttaaccatctattttaattaaatctaaggttaaaaattacttggtctatatgc 43065781  T
Q  215 tctctatt 222  Q
    ||||||||    
T  43065780 tctctatt 43065773  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 4962374 - 4962419
Alignment:
Q  117 gatcaaataacaccatggtgtcaaactaaattttgacatcaaatct 162  Q
    |||||||| |||||| ||||||||| |||||||||||| |||||||    
T  4962374 gatcaaatgacaccaaggtgtcaaattaaattttgacaccaaatct 4962419  T

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Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 117 - 248
Target Start/End: Original strand, 10092926 - 10093056
Alignment:
Q  117 gatcaaataacaccatggtgtcaaactaaattttgacatcaaatcttaatcatctattgtaattcaatctaaggctataaattatttggtttatatgctc 216  Q
    |||||||| || ||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||| |||||| ||||||  |||||||||    
T  10092926 gatcaaatgacgccatggtgtcaaactaaattt-gacatcaaatcttaaccatctattttaattcaatctaaggccataaataatttggagtatatgctc 10093024  T
Q  217 tctatttccttttttggagaagcaaaacaaat 248  Q
      ||||| ||||||| ||||||||||| ||||    
T  10093025 attattttcttttttagagaagcaaaataaat 10093056  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 117 - 241
Target Start/End: Complemental strand, 10093580 - 10093457
Alignment:
Q  117 gatcaaataacaccatggtgtcaaactaaattttgacatcaaatcttaatcatctattgtaattcaatctaaggctataaattatttggtttatatgctc 216  Q
    |||||||| | | |||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||| |||||||| || |  |||||||||    
T  10093580 gatcaaatgatatcatggtgtcaaactaaattt-gacatcaaatcttaatcatctattttaattaaatctaaggccataaattacttagagtatatgctc 10093482  T
Q  217 tctatttccttttttggagaagcaa 241  Q
    | | ||||||||||| |||||||||    
T  10093481 tttctttccttttttagagaagcaa 10093457  T

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Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 117 - 248
Target Start/End: Original strand, 54584236 - 54584366
Alignment:
Q  117 gatcaaataacaccatggtgtcaaactaaattttgacatcaaatcttaatcatctattgtaattcaatctaaggctataaattatttggtttatatgctc 216  Q
    |||||||| |||| ||||||||||||||||||| |||| || ||||||| |||||||| |||||||||||||||  |||||| ||||||  |||||||||    
T  54584236 gatcaaatgacactatggtgtcaaactaaattt-gacaccatatcttaaccatctattttaattcaatctaaggtcataaataatttggagtatatgctc 54584334  T
Q  217 tctatttccttttttggagaagcaaaacaaat 248  Q
      ||||| ||||||| ||||||||||||||||    
T  54584335 attattttcttttttagagaagcaaaacaaat 54584366  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 115 - 245
Target Start/End: Complemental strand, 54584930 - 54584801
Alignment:
Q  115 aggatcaaataacaccatggtgtcaaactaaattttgacatcaaatcttaatcatctattgtaattcaatctaaggctataaattatttggtttatatgc 214  Q
    |||||||||| ||||||||||||||||||||||||  |||||||||||||| |||||||| ||||| |||||||||| |||||||| || |   |||| |    
T  54584930 aggatcaaatgacaccatggtgtcaaactaaattta-acatcaaatcttaaccatctattttaattaaatctaaggccataaattacttagagcatatac 54584832  T
Q  215 tctctatttccttttttggagaagcaaaaca 245  Q
    ||| ||||| ||||||| |||||||||||||    
T  54584831 tctttattttcttttttagagaagcaaaaca 54584801  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 22259615 - 22259568
Alignment:
Q  115 aggatcaaataacaccatggtgtcaaactaaattttgacatcaaatct 162  Q
    |||||||||||||| || ||||||||| |||||||||||| |||||||    
T  22259615 aggatcaaataacatcaaggtgtcaaattaaattttgacaccaaatct 22259568  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 115 - 248
Target Start/End: Complemental strand, 19820917 - 19820785
Alignment:
Q  115 aggatcaaataacaccatggtgtcaaactaaattttgacatcaaatcttaatcatctattgtaattcaatctaaggctataaattatttggtttatatgc 214  Q
    |||||||||| | |||||||||| ||||||||||| |||| |||||||||| |||||||| |||||||||||||||| |||||| | || |  |||||||    
T  19820917 aggatcaaatgataccatggtgttaaactaaattt-gacaccaaatcttaaccatctattttaattcaatctaaggccataaataacttagagtatatgc 19820819  T
Q  215 tctctatttccttttttggagaagcaaaacaaat 248  Q
    |   ||||| ||||||| ||||||||||||||||    
T  19820818 ttattattttcttttttagagaagcaaaacaaat 19820785  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 31396405 - 31396496
Alignment:
Q  115 aggatcaaataacaccatggtgtcaaactaaattttgacatcaaatcttaatcatctattgtaattcaatctaaggctataaattatttggt 206  Q
    |||||||||| | ||| |||||| |||||||| ||||||| | |||| |||||||  |||||||||||||| ||||| | ||||||||||||    
T  31396405 aggatcaaatgaaaccttggtgtgaaactaaactttgacaccgaatcctaatcattcattgtaattcaatcaaaggccagaaattatttggt 31396496  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 38273556 - 38273604
Alignment:
Q  115 aggatcaaataacaccatggtgtcaaactaaattttgacatcaaatctta 164  Q
    ||||||||||||||||| ||||||||| |||| ||||||| |||||||||    
T  38273556 aggatcaaataacaccaaggtgtcaaa-taaaatttgacaccaaatctta 38273604  T

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