View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9055_low_5 (Length: 642)
Name: NF9055_low_5
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9055_low_5 |
 | |
|
| [»] scaffold0190 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 584; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 22 - 629
Target Start/End: Original strand, 39091819 - 39092426
Alignment:
| Q |
22 |
ttggtttcttcggttgcttttgatttcagttccgcaattttctcctttgtgaaatggaaaattctttcaggtaagttctggggaggttttctactttttg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39091819 |
ttggtttcttcggttgcttttgatttcagttccgcaattttctcctttgtgaaatggaaaattctttcaggtaagttctggggaggttttctactttttg |
39091918 |
T |
|
| Q |
122 |
cttctgtttctgtgaaagggaaacatattggaagttcaatgtcatttgggaaccaacgtttgaatgaagggagttttgttactttgtgggagtttttgga |
221 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39091919 |
cttctgtttctgtgaaagggaatcatattggaagttcaatgtcatttgggaaccaacgtttgaatgaagggagttttgttacttcgtgggagtttttgga |
39092018 |
T |
|
| Q |
222 |
gatttgtgaccaagtattgacgaaatgccaaaatgacttgccgtctgaaacaacatggttgacagtgaaaccaatgaagatgccgttggctaactccgtt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39092019 |
gatttgtgaccaagtattgacgaaatgccaaaatgacttgccgtctgaaacaacatggttgacagtgaaaccaatgaagatgccgttggctaactccgtt |
39092118 |
T |
|
| Q |
322 |
acttggatggctaagattggttgtgaagtggcttcgtggtttttaacaccgtttagtgggaaaaatgaatgaacaatggaaggaacgtagtttggttcaa |
421 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39092119 |
acttggacggctaagattggttgtgaagtggcttcgtggtttttaacaccgtttagtgggaaaaatgaatgaacaatggaaggaacgtagtttggttcaa |
39092218 |
T |
|
| Q |
422 |
ggatgtttgatacggttgtattttccgcttttgcatggacgaagagagcaccgaggttgttgcaaatgatggaacatgatgtgttattgttgttgtttgt |
521 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
39092219 |
ggatgtttgatacggttgtattttccgcttttgcatggacgaagagagcaccgaggttgttgcaaaggatggaacatgatgtgttgttgttgttgtttgt |
39092318 |
T |
|
| Q |
522 |
ggtcacgttgtgttgggtgattataagacggcccgttaagggtgggaaataggaaagtgttgtggaaagtgtttgtttcaaatggttgatttggttttgg |
621 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39092319 |
ggtcacgttgtgttgggtgattataagacggcccgttaagggtgggaaataggaaagtgttgtggaaagggtttgtttcaaatggttgatttggttttgg |
39092418 |
T |
|
| Q |
622 |
tttgatgt |
629 |
Q |
| |
|
|||||||| |
|
|
| T |
39092419 |
tttgatgt |
39092426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 22 - 625
Target Start/End: Original strand, 39088428 - 39089025
Alignment:
| Q |
22 |
ttggtttcttcggttgcttttgatttcagttccgcaattttctcctttgtgaaatggaaaattctttcaggtaagttctggggaggttttctactttttg |
121 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| || || |
|
|
| T |
39088428 |
ttggtttcttcatttgcttttgatttcagttccgcaattttctcctttgtaaaatggaaaattctttcaggtaagttctgcggaggttttctacgttgtg |
39088527 |
T |
|
| Q |
122 |
cttctgtttctgtgaaagggaaacatattggaagttcaatgtcatttgggaaccaacgtttgaatgaagggagttttgttactttgtgggagtttttgga |
221 |
Q |
| |
|
||| |||| ||||||||| || | |||||||||||||| || |||||||||||||||| |||||||||||||||| || | ||| ||||||| || |
|
|
| T |
39088528 |
attcggtttttgtgaaaggaaagcgtattggaagttcaacttcgtttgggaaccaacgttgaaatgaagggagttttggtatactctggaagttttttga |
39088627 |
T |
|
| Q |
222 |
gatttgtgaccaagtattgacgaaatgccaaaatgacttgccgtctgaaacaacatggttgacagtgaaaccaatgaagatgccgttggctaactccgtt |
321 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| ||||||||| ||||||| ||||||| ||| ||||||||||||||||| || |||||||||||| |
|
|
| T |
39088628 |
gatttgtgaccaagtattgatgaaatgccaaaacatcttgccgtcacaaacaacgtggttgagagtcaaaccaatgaagatgccattagctaactccgtt |
39088727 |
T |
|
| Q |
322 |
acttggatggctaagattggttgtgaagtggcttcgtggtttttaacaccgtttagtgggaaaaatgaatgaacaatggaaggaacgtagtttggttcaa |
421 |
Q |
| |
|
||||| | ||| |||||||||||||||||||||| ||||||||| ||||| |||||||||||||| ||||| || |||||||| |||||||||| || |
|
|
| T |
39088728 |
acttgaactcctagaattggttgtgaagtggcttcgtagtttttaactccgttaagtgggaaaaatgagtgaactatagaaggaacatagtttggtttaa |
39088827 |
T |
|
| Q |
422 |
ggatgtttgatacggttgtattttccgcttttgcatggacgaagagagcaccgaggttgttgcaaatgatggaacatgatgtgttattgttgttgtttgt |
521 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| || |||| |||||||||||| | |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39088828 |
ggatgtctgatacggttgtgttttccgctttggcgtggatgaagagagcaccaatgttgttgcaaatgatggaacatgatg------tgttgttgtttgt |
39088921 |
T |
|
| Q |
522 |
ggtcacgttgtgttgggtgattataagacggcccgttaagggtgggaaataggaaagtgttgtggaaagtgtttgtttcaaatggttgatttggttttgg |
621 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39088922 |
ggtcacattgtgttgggtgattataagacggcctgttaagggtgggaaataggaaagtgttgtggaaagtgtttgtttcaaatggttgatttggttttgg |
39089021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 22 - 625
Target Start/End: Original strand, 39082774 - 39083386
Alignment:
| Q |
22 |
ttggtttcttcggttgcttttgatttcagttccgcaattttctcctttgtgaaatggaaaattctttcaggtaagttctggggaggttttctactttttg |
121 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| || || |
|
|
| T |
39082774 |
ttggtttcttcatttgcttttgatttcagttccgcgattttctcctttgtgaaatggaatattctttcaggtaagttctgtcgcggttttctacattgtg |
39082873 |
T |
|
| Q |
122 |
cttctgtttctgtgaaagggaaacatattggaagttcaatgtcatttgggaaccaacgtttgaatgaagggagttttgttactttgtgggagtttttgga |
221 |
Q |
| |
|
||| |||| ||||||||| || | |||||||||||||| || |||||||||||||||| |||||||||||||| | || ||||||||| ||| || |
|
|
| T |
39082874 |
attcggtttttgtgaaaggaaatcgtattggaagttcaacgttgtttgggaaccaacgttgaaatgaagggagtttggatattttgtgggaaccttttga |
39082973 |
T |
|
| Q |
222 |
gatttgtgaccaagtattgacgaaatgccaaaatgacttgccgtctgaaacaacatggttgacagtgaaaccaatgaagatgccgttggctaactccgtt |
321 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||| |||||||||| |
|
|
| T |
39082974 |
gatttcagaccaagaattgacgaaatgccaaaatgacttgccgtctaaaacaacatggttgacagtgaaagcaatgaagataccgttacttaactccgtt |
39083073 |
T |
|
| Q |
322 |
acttggatggctaagattggttgtgaagtggcttcgtggtttttaacaccgtttagtgggaaaaatgaatgaacaatggaaggaacgtagtttggttcaa |
421 |
Q |
| |
|
||||||| |||| |||||||| || |||||||||| |||||||| ||||| |||||||||||||| ||||| || |||||||| |||| ||||| || |
|
|
| T |
39083074 |
acttggactgctagaattggttgagacgtggcttcgtagtttttaatgccgttaagtgggaaaaatgagtgaactatagaaggaacatagtctggtttaa |
39083173 |
T |
|
| Q |
422 |
ggatgtttgatacggttgtattttccgcttttgcatggacgaagagagcaccgaggttgttgcaaatgatggaacatgatg---------tgttattgtt |
512 |
Q |
| |
|
|||||| || || |||| ||||| |||||||| |||| |||||||||||| |||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
39083174 |
ggatgtcggaaacacttgtgttttctgcttttgcgtggatgaagagagcaccaaggttgttgcaaatgatggaacatgatgcattgttgttgttgttgtt |
39083273 |
T |
|
| Q |
513 |
gttgtttgtggtcacgttgtgttgggtgattataagacggcccgttaagggtgggaaataggaaagtgttgtggaaagtgtttgtttcaaatggttgatt |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
39083274 |
gttgtttgtggtcacgttgtgttgggtgattatgagacggcctgttaagagtgggaaataggaaagtgttgtagaaagtgtttgtttcaaatggttgatt |
39083373 |
T |
|
| Q |
613 |
tggttttggtttg |
625 |
Q |
| |
|
||||||||||||| |
|
|
| T |
39083374 |
tggttttggtttg |
39083386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 168 - 625
Target Start/End: Original strand, 39071464 - 39071915
Alignment:
| Q |
168 |
tgggaaccaacgtttgaatgaagggagttttgttactttgtgggagtttttggagatttgtgaccaagtattgacgaaatgccaaaatgacttgccgtct |
267 |
Q |
| |
|
|||||||||||||| |||||||||||||||| || ||||||||| ||| ||||||| ||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
39071464 |
tgggaaccaacgttgaaatgaagggagttttgatattttgtgggaacctttcaagatttgggaccaagaattgacgaaatgccaaaatgacttggcgtct |
39071563 |
T |
|
| Q |
268 |
gaaacaacatggttgacagtgaaaccaatgaagatgccgttggctaactccgttacttggatggctaagattggttgtgaagtggcttcgtggtttttaa |
367 |
Q |
| |
|
| ||||| |||||| ||||| ||||||||| ||| || ||||||||||||||||| |||| |||||| ||| || ||||||| |||||||| |
|
|
| T |
39071564 |
gcaacaatgtggttgcatgtgaattcaatgaagacgccattacttaactccgttacttggactgctagagttggttttgacgtagcttcgtagtttttaa |
39071663 |
T |
|
| Q |
368 |
caccgtttagtgggaaaaatgaatgaacaatggaaggaacgtagtttggttcaaggatgtttgatacggttgtattttccgcttttgcatggacgaagag |
467 |
Q |
| |
|
| ||||| | ||| ||||| || || ||||| ||| |||||| | || || ||||| || |||||||||| | | | ||||||||||| || |
|
|
| T |
39071664 |
cgccgttaaatggaaaaaacgagtggacaattagaggtgtgtagttggattgaaagatgtcatcgaccgttgtattttgtgttgtggcatggacgaatag |
39071763 |
T |
|
| Q |
468 |
agcaccgaggttgttgcaaatgatggaacatgatgtgttattgttgttgtttgtggtcacgttgtgttgggtgattataagacggcccgttaagggtggg |
567 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39071764 |
ggcaccaaggttgttgcaaattatggaacatgatgtgtt---gttgttgtttgtggtcacgttgtgttgggtgattataagacggc---ttaagggtggg |
39071857 |
T |
|
| Q |
568 |
aaataggaaagtgttgtggaaagtgtttgtttcaaatggttgatttggttttggtttg |
625 |
Q |
| |
|
||||| || |||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39071858 |
aaataagagagtgttgtagaaagtgtttgtttcaaatggttgatttggttttggtttg |
39071915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 39071381 - 39071437
Alignment:
| Q |
35 |
ttgcttttgatttcagttccgcaattttctcctttgtgaaatggaaaattctttcag |
91 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||| |||||||||| |
|
|
| T |
39071381 |
ttgcttttgatttcagttcctcgattttctcctttgtgaaatggaagattctttcag |
39071437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 39080443 - 39080499
Alignment:
| Q |
35 |
ttgcttttgatttcagttccgcaattttctcctttgtgaaatggaaaattctttcag |
91 |
Q |
| |
|
||||||||||||| ||||||| |||||||| |||||||||||||| |||||||||| |
|
|
| T |
39080443 |
ttgcttttgatttttgttccgcgattttctcttttgtgaaatggaagattctttcag |
39080499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 39098099 - 39098154
Alignment:
| Q |
28 |
tcttcggttgcttttgatttcagttccgcaattttctcctttgtgaaatggaaaat |
83 |
Q |
| |
|
|||||| | ||||||||||| |||| |||||||||||||||||| ||||||||||| |
|
|
| T |
39098099 |
tcttcgttagcttttgatttgagtttcgcaattttctcctttgtaaaatggaaaat |
39098154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 277 - 392
Target Start/End: Original strand, 5125 - 5240
Alignment:
| Q |
277 |
tggttgacagtgaaaccaatgaagatgccgttggctaactccgttacttggatggctaagattggttgtgaagtggcttcgtggtttttaacaccgttta |
376 |
Q |
| |
|
||||| || ||||| |||||||||||||||| ||||||||||||||||||| || | | ||||||||| || |||||| ||||||||| || |||| |
|
|
| T |
5125 |
tggttaactgtgaagccaatgaagatgccgtcaactaactccgttacttggattgcaagtaatggttgtgatgttccttcgtagtttttaactccattta |
5224 |
T |
|
| Q |
377 |
gtgggaaaaatgaatg |
392 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
5225 |
gtgcaaaaaatgaatg |
5240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 11969347 - 11969392
Alignment:
| Q |
35 |
ttgcttttgatttcagttccgcaattttctcctttgtgaaatggaa |
80 |
Q |
| |
|
|||||||||||||||||| | |||||||| ||||||||||||||| |
|
|
| T |
11969347 |
ttgcttttgatttcagttgcaaaattttctgctttgtgaaatggaa |
11969392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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