View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9055_low_51 (Length: 277)
Name: NF9055_low_51
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9055_low_51 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 24 - 260
Target Start/End: Complemental strand, 5469566 - 5469337
Alignment:
| Q |
24 |
gttagatcaaatataagatgtagaagactcacttgagggtaagattgttgaattcaagtgtaaatggttccttccaaattaagttcaatgttgggtgtat |
123 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5469566 |
gttagatcaagtataagatgtagaagactcacttgagggtaagattgttgaattcaagtgtaaatggttccttccaaattaagttcaatgttgggtgtat |
5469467 |
T |
|
| Q |
124 |
aannnnnnnttggattgttgaattcaagtgtgagtggttaattcaacatcgactataaatgaatggtcaatgttggatgt-agataggtactcatataca |
222 |
Q |
| |
|
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5469466 |
aagggggggttggattgttgaatacaagtgtgagtggttaattcaacatcgactataaatgaatggtcaatgttggatgtaagataggtactc------- |
5469374 |
T |
|
| Q |
223 |
tattaccttaagattttgggtgcagatctagtgtctgt |
260 |
Q |
| |
|
||||||||| ||||||||||||| ||| ||||||||| |
|
|
| T |
5469373 |
-attaccttatgattttgggtgcatatccagtgtctgt |
5469337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University