View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9055_low_52 (Length: 277)
Name: NF9055_low_52
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9055_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 53167686 - 53167427
Alignment:
| Q |
1 |
cttagaccatagacgaaattttcaaacaaattttgaatgcataaattcagctttctttcttaaacatgttttaaattgcagacatcagacgcaatttaac |
100 |
Q |
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| T |
53167686 |
cttagaccgtagacgaaattttcaaacaaattttgaatgcataaattcagctttctttcttaaacatgttttaaattgcagacatcagacgcaatttaac |
53167587 |
T |
|
| Q |
101 |
atattttgaggtctcctcagcagcatcaagaccgcaatttcgattgtatgagtcacattttctctgaaatataactgtgaccgcaatttaaaaccataac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
53167586 |
atattttgaggtctcctcagcagcatcaagaccgcaatttcgattgtatgagtcacattttttctgaaatataactgtgaccacaatttaaaaccataac |
53167487 |
T |
|
| Q |
201 |
catgtctttaagcttaactataaaacatatcagaaatttcaagttttactatgtctaatt |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53167486 |
catgtctttaagcttaactataaaacatatcagaaatttcaagttttactatgtctaatt |
53167427 |
T |
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