View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9055_low_60 (Length: 243)
Name: NF9055_low_60
Description: NF9055
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9055_low_60 |
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Alignment Details
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 120 - 230
Target Start/End: Complemental strand, 18106679 - 18106570
Alignment:
| Q |
120 |
aactaagataaatcttcaattttgtagaaataatgcagtcaaatatgtgtataaccaaaataataacactactaaacaatatcaaggccgtctacaacaa |
219 |
Q |
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| T |
18106679 |
aactaagataaagcttcaattttgtagaaataatgcagtcaaatatgtgtatcgccaaaataataatactact-aacaatatcaaggccgtctacgacaa |
18106581 |
T |
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| Q |
220 |
aagatagaact |
230 |
Q |
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| T |
18106580 |
aagatagaact |
18106570 |
T |
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Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 18106962 - 18106881
Alignment:
| Q |
12 |
cccacatggagaaggtataatgccggtttgcaaaggaacacacaagactggaatgaaacctacaattgagttcatctaacatt |
94 |
Q |
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| T |
18106962 |
cccacatagaaaaggtataatgccggtgtgcaaaggaacacac-agaccgaaatgaaacctataattgagttcatctaacatt |
18106881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 37876180 - 37876104
Alignment:
| Q |
154 |
gcagtcaaatatgtgtataaccaaaataataacactactaaacaatatcaaggccgtctacaacaaaagatagaact |
230 |
Q |
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| T |
37876180 |
gcagtcaaatatgtgtataaccaaaataataacactactaaacaatatcaaggccgtctacaacaaaagatagaact |
37876104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 37876306 - 37876181
Alignment:
| Q |
1 |
tatgaagaccccccacatggagaaggtataatgccggtttgcaaaggaacacacaagac--tggaatgaaac---ctacaattgagttcatctaacattn |
95 |
Q |
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| T |
37876306 |
tatgaagaccccc-acatggagaaggtataatgccggtttgcaaaggaacacac-agaccatagaatgaaacctactacaattgagttcatctaacatt- |
37876210 |
T |
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| Q |
96 |
nnnnnnncaagtctattgtgcatcaacta |
124 |
Q |
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|||||||||||||||||||||| |
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| T |
37876209 |
aaaaaaacaagtctattgtgcatcaacta |
37876181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 23895501 - 23895577
Alignment:
| Q |
154 |
gcagtcaaatatgtgtataaccaaaataataacactactaaacaatatcaaggccgtctacaacaaaagatagaact |
230 |
Q |
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| T |
23895501 |
gcagtcaaatatgtgtataaccaaaataataacactactaaacaatatcaaggccgtctacaacaaaagatagaact |
23895577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 23895375 - 23895500
Alignment:
| Q |
1 |
tatgaagaccccccacatggagaaggtataatgccggtttgcaaaggaacacacaagac--tggaatgaaac---ctacaattgagttcatctaacattn |
95 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||| |||||||||||||||||||||||| |
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| T |
23895375 |
tatgaagacccc-cacatggagaaggtataatgccggtttgcaaaggaacacac-agaccatagaatgaaacctactacaattgagttcatctaacatt- |
23895471 |
T |
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| Q |
96 |
nnnnnnncaagtctattgtgcatcaacta |
124 |
Q |
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|||||||||||||||||||||| |
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| T |
23895472 |
aaaaaaacaagtctattgtgcatcaacta |
23895500 |
T |
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